Browse Element(s) Details


OsAffx.25639.1.S1_at

Description tigr:9631.m04804
TID=OsAffx.25639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4928011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed
LOC_Os03g49270Os.23084.1.S1_at11/113+28003740..28004353expressed protein
LOC_Os03g49280OsAffx.25639.1.S1_at11/113+28007599..28007869hypothetical protein
LOC_Os03g49290NANA3+28010599..28011371hypothetical protein
LOC_Os03g49300NANA3+28013198..28013491hypothetical protein
LOC_Os03g49310OsAffx.13421.1.S1_at11/113+28016438..28018603expressed protein
LOC_Os03g49310Os.50022.1.S1_at8/113+28016438..28018603expressed protein
LOC_Os03g49330OsAffx.22947.1.S1_x_at11/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.2.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.3.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.5.S1_x_at3/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25639.1.S1_at--980--8391Chr03:28007743..28007767 (25 bp)
GGCGCCGATGGCCTGCAGCCAGTGC
LOC_Os03g49280
OsAffx.25639.1.S1_at--966--3371Chr03:28007728..28007752 (25 bp)
CAGCCAGTGCGACCAGATGTGCAAC
LOC_Os03g49280
OsAffx.25639.1.S1_at--685--1131Chr03:28007723..28007747 (25 bp)
AGTGCGACCAGATGTGCAACTCCTC
LOC_Os03g49280
OsAffx.25639.1.S1_at--271--1311Chr03:28007714..28007738 (25 bp)
AGATGTGCAACTCCTCTTGCGAGGG
LOC_Os03g49280
OsAffx.25639.1.S1_at--1104--9011Chr03:28007709..28007733 (25 bp)
TGCAACTCCTCTTGCGAGGGCGCCG
LOC_Os03g49280
OsAffx.25639.1.S1_at--591--8251Chr03:28007685..28007709 (25 bp)
GGCAGCGAGCCGTGCAGCTACGCCT
LOC_Os03g49280
OsAffx.25639.1.S1_at--727--5871Chr03:28007679..28007703 (25 bp)
GAGCCGTGCAGCTACGCCTGCGGCT
LOC_Os03g49280
OsAffx.25639.1.S1_at--244--1091Chr03:28007648..28007672 (25 bp)
AGGGCTGCATGCAGGCCTACTTCTA
LOC_Os03g49280
OsAffx.25639.1.S1_at--592--9051Chr03:28007643..28007667 (25 bp)
TGCATGCAGGCCTACTTCTACAGGT
LOC_Os03g49280
OsAffx.25639.1.S1_at--794--631Chr03:28007640..28007664 (25 bp)
ATGCAGGCCTACTTCTACAGGTGCC
LOC_Os03g49280
OsAffx.25639.1.S1_at--304--891Chr03:28007636..28007660 (25 bp)
AGGCCTACTTCTACAGGTGCCTGCC
LOC_Os03g49280
Target Sequence 
GGCGCCGATGGCCTGCAGCCAGTGCGACCAGATGTGCAACTCCTCTTGCGAGGGCGCCGGCAGCGAGCCGTGCAGCTACG
CCTGCGGCTCGTGCCAGGGCTGCATGCAGGCCTACTTCTACAGGTGCCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis