Browse Element(s) Details


Os.53012.1.S1_at

Description gb:AK070428.1
DB_XREF= gi:32980452
TID=Os.53012.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049O05, full insert sequence.
FL= gb:AK070428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4925011/11LysM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49190Os.12251.1.S1_at11/113+27971039..27971998Oleosin family protein, expressed
LOC_Os03g49200Os.56996.1.S1_at11/113+27972395..27975786Cell division cycle protein cdt2, putative, expressed
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed
LOC_Os03g49270Os.23084.1.S1_at11/113+28003740..28004353expressed protein
LOC_Os03g49280OsAffx.25639.1.S1_at11/113+28007599..28007869hypothetical protein
LOC_Os03g49290NANA3+28010599..28011371hypothetical protein
LOC_Os03g49300NANA3+28013198..28013491hypothetical protein
LOC_Os03g49310OsAffx.13421.1.S1_at11/113+28016438..28018603expressed protein
LOC_Os03g49310Os.50022.1.S1_at8/113+28016438..28018603expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016998biological_processcell wall catabolism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53012.1.S1_at--19--6171Chr03:27996660..27996684 (25 bp)
GAGGTTGCAGTCTTTTATCCCCAGG
LOC_Os03g49250
Os.53012.1.S1_at--466--4251Chr03:27996680..27996704 (25 bp)
CCAGGGACGCCCTAGTGGAAAAGCA
LOC_Os03g49250
Os.53012.1.S1_at--692--2431Chr03:27996698..27996722 (25 bp)
AAAAGCAGAATCCTCGACGAACACT
LOC_Os03g49250
Os.53012.1.S1_at--1121--10391Chr03:27996751..27996775 (25 bp)
TTTTGGAGTCAGTCAAGCGAAGCTT
LOC_Os03g49250
Os.53012.1.S1_at--961--1631Chr03:27996766..27996790 (25 bp)
AGCGAAGCTTGCATACCGATGACAG
LOC_Os03g49250
Os.53012.1.S1_at--396--1431Chr03:27996789..27996813 (25 bp)
AGAACCGCTGCGTACTACTTATCTG
LOC_Os03g49250
Os.53012.1.S1_at--928--351Chr03:27996913..27996937 (25 bp)
ATAAGGGCATGGCATTTGCCGCTGC
LOC_Os03g49250
Os.53012.1.S1_at--1110--10691Chr03:27996928..27996952 (25 bp)
TTGCCGCTGCGTACTACTTATCTGT
LOC_Os03g49250
Os.53012.1.S1_at--316--7631Chr03:27997006..27997030 (25 bp)
GGGAGCGGCAACAAACAGGCCACTA
LOC_Os03g49250
Os.53012.1.S1_at--651--5351Chr03:27997091..27997115 (25 bp)
GAAGATCACTACTACCTGTTTGGCC
LOC_Os03g49250
Os.53012.1.S1_at--731--271Chr03:27997129..27997153 (25 bp)
ATATGTGGTTTACCCTCTGTACATG
LOC_Os03g49250
Target Sequence 
GAGGTTGCAGTCTTTTATCCCCAGGGACGCCCTAGTGGAAAAGCAGAATCCTCGACGAACACTGCTGCTGCAGAACGACG
AAGCAGAAGGATTTTGGAGTCAGTCAAGCGAAGCTTGCATACCGATGACAGAACCGCTGCGTACTACTTATCTGTCACAG
ACGGTGATCCAAGGGCAGCCATGATGGAGTACTCTGAGGACCTAAGGTGGGAGAGGCAACAAACAGGCCACTAGATGTAA
GGTCAATGGGAAGATAAGGGCATGGCATTTGCCGCTGCGTACTACTTATCTGTCACAGACGGTGATCCAAGGGCAGCCAT
GATGGAGTACTCTGAGGACCTAAGGTGGGAGCGGCAACAAACAGGCCACTAGATGTAATCATGTAAGGTCAATGGGAAGA
TAAGGGCATGGCATAATGATGCAGGTTATTGGAAGATCACTACTACCTGTTTGGCCGCTTGAACAATATATATGTGGTTT
ACCCTCTGTACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis