Browse Element(s) Details


Os.23084.1.S1_at

Description gb:AK107697.1
DB_XREF= gi:32992906
TID=Os.23084.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-C07, full insert sequence.
FL= gb:AK107697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4927011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49210Os.7484.1.S1_at11/113+27978580..27984261Pescadillo N-terminus family protein, expressed
LOC_Os03g49220Os.27054.1.S1_at11/113+27984660..27988144Adenylosuccinate synthetase, chloroplast precursor, putative, expressed
LOC_Os03g49230Os.22588.1.S1_at10/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49230Os.36776.1.S1_at1/113+27988520..27991552N-acetyltransferase 5, putative, expressed
LOC_Os03g49240OsAffx.12144.2.A1_s_at11/113+27992704..27993996hypothetical protein
LOC_Os03g49250Os.53012.1.S1_at11/113+27995291..27997255LysM domain containing protein, expressed
LOC_Os03g49260Os.18598.1.S1_at11/113+27998774..28002905Lipoxygenase 1, putative, expressed
LOC_Os03g49270Os.23084.1.S1_at11/113+28003740..28004353expressed protein
LOC_Os03g49280OsAffx.25639.1.S1_at11/113+28007599..28007869hypothetical protein
LOC_Os03g49290NANA3+28010599..28011371hypothetical protein
LOC_Os03g49300NANA3+28013198..28013491hypothetical protein
LOC_Os03g49310OsAffx.13421.1.S1_at11/113+28016438..28018603expressed protein
LOC_Os03g49310Os.50022.1.S1_at8/113+28016438..28018603expressed protein
LOC_Os03g49330OsAffx.22947.1.S1_x_at11/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.2.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.3.S1_x_at4/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g49330OsAffx.22947.5.S1_x_at3/113+28025900..28029589retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23084.1.S1_at--888--551Chr03:28004169..28004193 (25 bp)
ATCCGGTGCCGGAAGTGCGACCACG
LOC_Os03g49270
Os.23084.1.S1_at--459--1951Chr03:28004120..28004144 (25 bp)
ACGGCCGCAACTCGGACTGCAGCGT
LOC_Os03g49270
Os.23084.1.S1_at--814--2551Chr03:28003989..28004013 (25 bp)
AACTGATCAATTTCTACCGGCTAAA
LOC_Os03g49270
Os.23084.1.S1_at--854--91Chr03:28003965..28003989 (25 bp)
ATTCGTCCGAAACTGGGTGCATCCA
LOC_Os03g49270
Os.23084.1.S1_at--1085--7311Chr03:28003949..28003973 (25 bp)
GTGCATCCATATGTGTTGTGACTTG
LOC_Os03g49270
Os.23084.1.S1_at--394--8691Chr03:28003933..28003957 (25 bp)
TGTGACTTGTGTAGACGACAGTGTT
LOC_Os03g49270
Os.23084.1.S1_at--42--3091Chr03:28003890..28003914 (25 bp)
AATAAGGGAGGCTCTGTGCTGCCAG
LOC_Os03g49270
Os.23084.1.S1_at--667--4411Chr03:28003870..28003894 (25 bp)
GCCAGCCAGTACGAATATGCATGTT
LOC_Os03g49270
Os.23084.1.S1_at--584--1292Chr10:5313500..5313879 (25 bp)
AGATGCTCACACACTAATTGCTTGG
NONE
Os.23084.1.S1_at--959--6691Chr03:28003801..28003825 (25 bp)
GTTCCGTTCAAGCTAGATTTGTGCA
LOC_Os03g49270
Os.23084.1.S1_at--799--1231Chr03:28003745..28003769 (25 bp)
AGTTGTGCACGCTTGTTAACCGTTC
LOC_Os03g49270
Target Sequence 
ATCCGGTGCCGGAAGTGCGACCACGCGTGCAAGAAGTCGTGCAAGGGCTACGGCCGCAACTCGGACTGCAGCGTCCCCTG
CGGCGACCCATCCAACAAGGCCGGCTGCAAGAGCTGCCTCCAGGCCTACTACTCGAAGTGCCTCAACTACTGTGGCCAGG
CCTGCCGCGCCGTCTGCATCAACTGATCAATTTCTACCGGCTAAATTCGTCCGAAACTGGGTGCATCCATATGTGTTGTG
ACTTGTGTAGACGACAGTGTTGATTACTGGGTGTGATCAAATAAGGGAGGCTCTGTGCTGCCAGCCAGTACGAATATGCA
TGTTTAATTTGCAAATGGAGATGCTCACACACTAATTGCTTGGNTAGTGTTCCGTTCAAGCTAGATTTGTGCAATTATTA
GCTATGTGCTGAAGTGATATGGAAAGTTGTGCACGCTTGTTAACCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis