Browse Element(s) Details


OsAffx.15996.1.S1_x_at

Description tigr:9634.m04814
TID=OsAffx.15996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4942011/11NB-ARC domain containing protein, expressed
LOC_Os11g437804/11retrotransposon protein, putative, LINE subclass
LOC_Os02g040904/11retrotransposon protein, putative, LINE subclass
LOC_Os03g104901/11retrotransposon protein, putative, LINE subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49380Os.53902.1.S1_x_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49380OsAffx.15995.1.S1_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_s_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390Os.53902.1.S1_x_at1/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49399OsAffx.2793.1.S1_at1/116+29933384..29934106NA
LOC_Os06g49410OsAffx.28188.1.S1_at11/116+29937346..29937934hypothetical protein
LOC_Os06g49410OsAffx.30123.1.S1_at3/116+29937346..29937934hypothetical protein
LOC_Os06g49420OsAffx.15996.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S2_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.57318.1.S1_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49430Os.7913.1.S1_a_at11/116+29948900..29953876Protein kinase domain containing protein, expressed
LOC_Os06g49440Os.24609.1.A1_s_at11/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49440Os.52405.1.S1_at1/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49450Os.48739.1.S1_x_at6/116+29960227..29966297expressed protein
LOC_Os06g49460Os.11864.1.S1_at11/116+29967038..29969466RER1B protein, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_s_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15996.1.S1_x_at--1076--7371Chr06:29940271..29940295 (25 bp)
GTGAGTTCATCAGTTCGTTGCCCAA
LOC_Os06g49420
OsAffx.15996.1.S1_x_at--292--6671Chr06:29940255..29940279 (25 bp)
GTTGCCCAAGAGTGGTCTTCCAAGT
LOC_Os06g49420
OsAffx.15996.1.S1_x_at--953--7932Chr03:5323304..5323356 (25 bp)
GGATTTAATCCCCTGCACACAGAAA
LOC_Os03g10490
OsAffx.15996.1.S1_x_at--563--5931Chr06:29939693..29939717 (25 bp)
GAGCAAACAATCCTTTTCCGGGAGG
LOC_Os06g49420
OsAffx.15996.1.S1_x_at--580--6193Chr11:25939021..25939045 (25 bp)
GAGGAACCATCCGAGCTATTGCACC
LOC_Os11g43780
OsAffx.15996.1.S1_x_at--197--9632Chr11:25938984..25939008 (25 bp)
TCATGTCTCTACTCGTATCCGGAAG
LOC_Os11g43780
OsAffx.15996.1.S1_x_at--941--4752Chr11:25938947..25938971 (25 bp)
GCTGAAGCGCTGTCTAACCGTAGAT
LOC_Os11g43780
OsAffx.15996.1.S1_x_at--233--8473Chr11:25938906..25938929 (24 bp)
TGGCGCGCTTGGGACTCAGGCAATA
LOC_Os11g43780
OsAffx.15996.1.S1_x_at--933--2392Chr06:29939501..29939525 (25 bp)
AAACTTTGGTCGCTGATTCAGTCAG
LOC_Os06g49420
OsAffx.15996.1.S1_x_at--745--1152Chr06:29939482..29939506 (25 bp)
AGTCAGTTGATTGTTCTTCCGCAGA
LOC_Os06g49420
OsAffx.15996.1.S1_x_at--232--9951Chr06:29939403..29939427 (25 bp)
TACCTACCGAGCTTTGTTCCTTGGA
LOC_Os06g49420
Target Sequence 
GTGAGTTCATCAGTTCGTTGCCCAAGAGTGGTCTTCCAAGTTCACTAGAAATACTAGATGTCTCTGGAGGCAGCGAGGAG
CTCAAAAGGCAGTGCCGCAAGCTAAGAGGAACCATTCCAATCATCAAAGACAGCGACTGGGATTTGATTGTGAGAGAATT
GTGGGATTTAATCCCCTGCACACAGAAAGAACTTCACCTTGTCGCCGCCTCCACCGTCTGTCAGCTAGGTAACGAGCAAA
CAATCCTTTTCCGGGAGGACAATTGGTTGCAAGGAGGAACCATCCGAGCTATTGCACCCTCCATCTACGATCATGTCTCT
ACTCGTATCCGGAAGCGCCGGATGGTGGCTGAAGCGCTGTCTAACCGTAGATGGATCAAGGACATAAGTGGCGCGCTTGG
GACTCAGGCAATACTCGAATACCTCAAACTTTGGTCGCTGATTCAGTCAGTTGATTGTTCTTCCGCAGAGCCCGACTCAC
TCTCCTGGAAGTGGGAAAGCTCAAGCAAATACACTTCAAAATCTACCTACCGAGCTTTGTTCCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15996.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis