Browse Element(s) Details


Os.52405.1.S1_at

Description gb:AK066901.1
DB_XREF= gi:32976919
TID=Os.52405.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013092G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092G03, full insert sequence.
FL= gb:AK066901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g494401/11Carboxylesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49390OsAffx.28187.1.S1_s_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390Os.53902.1.S1_x_at1/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49399OsAffx.2793.1.S1_at1/116+29933384..29934106NA
LOC_Os06g49410OsAffx.28188.1.S1_at11/116+29937346..29937934hypothetical protein
LOC_Os06g49410OsAffx.30123.1.S1_at3/116+29937346..29937934hypothetical protein
LOC_Os06g49420OsAffx.15996.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S2_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.57318.1.S1_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49430Os.7913.1.S1_a_at11/116+29948900..29953876Protein kinase domain containing protein, expressed
LOC_Os06g49440Os.24609.1.A1_s_at11/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49440Os.52405.1.S1_at1/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49450Os.48739.1.S1_x_at6/116+29960227..29966297expressed protein
LOC_Os06g49460Os.11864.1.S1_at11/116+29967038..29969466RER1B protein, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_s_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49480Os.11856.1.S1_at11/116+29972847..29975324Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os06g49490Os.7425.1.S1_at11/116+29975878..29976669zinc finger family protein, putative, expressed
LOC_Os06g49500Os.14849.1.S1_a_at11/116+29977814..29980993integral membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52405.1.S1_at--575--8651Chr06:29954748..29954772 (25 bp)
TGTGGCTCAGTTATTGATCAATTAG
LOC_Os06g49440
Os.52405.1.S1_at--883--2891Chr06:29954702..29954726 (25 bp)
AAGGTGATGCTTCTTGATCTATTAG
NONE
Os.52405.1.S1_at--838--10451Chr06:29954681..29954705 (25 bp)
TTAGCACAGCTCTTTTTACAGAGGA
NONE
Os.52405.1.S1_at--571--6191Chr06:29954661..29954685 (25 bp)
GAGGAACAGCACATGATAACCTTCA
NONE
Os.52405.1.S1_at--347--6471Chr06:29954647..29954671 (25 bp)
GATAACCTTCACATGCCATTGGTTG
NONE
Os.52405.1.S1_at--134--5531Chr06:29954598..29954622 (25 bp)
GAAAAGCTGGCCAGTCTTCATTCCT
NONE
Os.52405.1.S1_at--682--9591Chr06:29954581..29954605 (25 bp)
TCATTCCTCCATGGACCAGATCTAA
NONE
Os.52405.1.S1_at--773--4991Chr06:29954539..29954563 (25 bp)
GCATGATTTGCATCTGAATTGAGTA
NONE
Os.52405.1.S1_at--1086--5451Chr06:29954494..29954518 (25 bp)
GAACGTGCATTGTGCGTGGGCATAA
NONE
Os.52405.1.S1_at--436--8691Chr06:29954484..29954508 (25 bp)
TGTGCGTGGGCATAACTCATAAGAA
NONE
Os.52405.1.S1_at--806--2091Chr06:29954451..29954475 (25 bp)
ACATCTTTGGACGACTGTTTGCAGT
NONE
Target Sequence 
TGTGGCTCAGTTATTGATCAATTAGACAAGAAAACATTGCATGCGAAAGGTGATGCTTCTTGATCTATTAGCACAGCTCT
TTTTACAGAGGAACAGCACATGATAACCTTCACATGCCATTGGTTGGAAAATGAACATGCTCACATGGTGGAAAAGCTGG
CCAGTCTTCATTCCTCCATGGACCAGATCTAATCTAAATATCTAATGTTGCATGATTTGCATCTGAATTGAGTAACATGA
TGGTAAGAGTAGATGAACGTGCATTGTGCGTGGGCATAACTCATAAGAAGTGGCAAAACATCTTTGGACGACTGTTTGCA
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis