Browse Element(s) Details


Os.53727.1.S2_x_at

Description gb:AK099567.1
DB_XREF= gi:32984776
TID=Os.53727.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033085A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034N02, full insert sequence.
FL= gb:AK099567.1 gb:AK102129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4942011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49380Os.53902.1.S1_x_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49380OsAffx.15995.1.S1_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_s_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390Os.53902.1.S1_x_at1/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49399OsAffx.2793.1.S1_at1/116+29933384..29934106NA
LOC_Os06g49410OsAffx.28188.1.S1_at11/116+29937346..29937934hypothetical protein
LOC_Os06g49410OsAffx.30123.1.S1_at3/116+29937346..29937934hypothetical protein
LOC_Os06g49420OsAffx.15996.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S2_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.57318.1.S1_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49430Os.7913.1.S1_a_at11/116+29948900..29953876Protein kinase domain containing protein, expressed
LOC_Os06g49440Os.24609.1.A1_s_at11/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49440Os.52405.1.S1_at1/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49450Os.48739.1.S1_x_at6/116+29960227..29966297expressed protein
LOC_Os06g49460Os.11864.1.S1_at11/116+29967038..29969466RER1B protein, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_s_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53727.1.S2_x_at--564--5931Chr06:29939693..29939717 (25 bp)
GAGCAAACAATCCTTTTCCGGGAGG
LOC_Os06g49420
Os.53727.1.S2_x_at--554--53Chr11:25938578..25938602 (25 bp)
ATTGATCATATCCTAGTCGGCTGCC
NONE
Os.53727.1.S2_x_at--258--3215Chr01:37209093..37209117 (25 bp)
CAAGGCAGCTTTGGTGGTGGACTTT
NONE
Os.53727.1.S2_x_at--554--8135Chr01:37209111..37209135 (25 bp)
GGACTTTGAGAGCAATCGGCCACCC
NONE
Os.53727.1.S2_x_at--717--6091Chr06:29939069..29939093 (25 bp)
GAGTCACATCGTTGAGGCTTCGACA
LOC_Os06g49420
Os.53727.1.S2_x_at--995--8154Chr03:5324086..5324115 (25 bp)
GGAACGGTCGGATCTTCAATCAGCA
NONE
Os.53727.1.S2_x_at--67--5435Chr01:37209332..37209356 (25 bp)
GAAGCCTCTCTTTGGCGTAAAGCAA
NONE
Os.53727.1.S2_x_at--531--4631Chr06:29938910..29938934 (25 bp)
GCGATCCTTGCGCTGTAATTCAGGA
LOC_Os06g49420
Os.53727.1.S2_x_at--1048--10516Chr03:5324204..5324228 (25 bp)
TTCAGGAGGGAGTTTGGTCGCCAAA
NONE
Os.53727.1.S2_x_at--1105--6794Chr01:37209436..37209460 (25 bp)
GTTATTGTCCTGTATCAGTCCCGTG
NONE
Os.53727.1.S2_x_at--1094--55125Chr12:3617523..3617546 (24 bp)
GAAAAAATGCGCTCCTTGCGTATTC
NONE
Target Sequence 
GAGCAAACAATCCTTTTCCGGGAGGACAATTGGTTGAATAGATGCTGGACAGCCGACCGATTGCGGAGTCGGGGATTGCC
GCATCCCGACCGCTGCATTCTCTGTGATCAGCAGGATGAGAGCATTGATCATATCCTAGTCGGCTGCCCAGAATCAAGGC
AGCTTTGGTGGTGGACTTTGAGAGCAATCGGCCACCCCAACTGCCTGCTGGTGAATGAAGCTTCTTTTCACCAATGGATG
TGCGATAGCAGAATGGTGCTAAGTGAGTCACATCGTTGAGGCTTCGACACGGTGGTGACATTGGTAGCATGGACAATATG
GAAGGAACGGAACGGTCGGATCTTCAATCAGCAGTGTAGATCTTGGGCGGATGTGGCCAGAGGGATGGTGGACGAAGCCT
CTCTTTGGCGTAAAGCAAACCCGGCGATCCTTGCGCTGTAATTCAGGAGGGAGTTTGGTCGCCAAAATTAGCGTGAGAGA
TAGACTTAGGATTGTCTGTTATTGTCCTGTATCAGTCCCGTGCTGTTTTTTTTTCTTTCAAATGTAAATAACTTTTATTT
CTCTTAATGGAAAAAATGCGCTCCTTGCGTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53727.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis