Browse Element(s) Details


OsAffx.28188.1.S1_at

Description tigr:9634.m04813
TID=OsAffx.28188.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4941011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49380Os.53902.1.S1_x_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49380OsAffx.15995.1.S1_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_s_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390Os.53902.1.S1_x_at1/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49399OsAffx.2793.1.S1_at1/116+29933384..29934106NA
LOC_Os06g49410OsAffx.28188.1.S1_at11/116+29937346..29937934hypothetical protein
LOC_Os06g49410OsAffx.30123.1.S1_at3/116+29937346..29937934hypothetical protein
LOC_Os06g49420OsAffx.15996.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S2_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.57318.1.S1_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49430Os.7913.1.S1_a_at11/116+29948900..29953876Protein kinase domain containing protein, expressed
LOC_Os06g49440Os.24609.1.A1_s_at11/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49440Os.52405.1.S1_at1/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49450Os.48739.1.S1_x_at6/116+29960227..29966297expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28188.1.S1_at--739--2711Chr06:29937387..29937411 (25 bp)
AAGCATTGTTCCTAGGGATAACCCG
LOC_Os06g49410
OsAffx.28188.1.S1_at--539--4931Chr06:29937389..29937413 (25 bp)
GCATTGTTCCTAGGGATAACCCGGT
LOC_Os06g49410
OsAffx.28188.1.S1_at--176--9391Chr06:29937451..29937471 (21 bp)
TCGATGCTAGTACTTCGTCTGCTTT
LOC_Os06g49410
OsAffx.28188.1.S1_at--701--4571Chr06:29937724..29937748 (25 bp)
GCGTGGTTTCGACACCATTGCAACC
LOC_Os06g49410
OsAffx.28188.1.S1_at--271--6831Chr06:29937729..29937753 (25 bp)
GTTTCGACACCATTGCAACCCTCGT
LOC_Os06g49410
OsAffx.28188.1.S1_at--376--3791Chr06:29937749..29937773 (25 bp)
CTCGTCGCCTGGACAATCTGGAAAG
LOC_Os06g49410
OsAffx.28188.1.S1_at--508--4211Chr06:29937837..29937861 (25 bp)
CCGCCGAAGCAGAACTCTGGAGACT
LOC_Os06g49410
OsAffx.28188.1.S1_at--86--1531Chr06:29937844..29937868 (25 bp)
AGCAGAACTCTGGAGACTTGCGCGA
LOC_Os06g49410
OsAffx.28188.1.S1_at--1067--2531Chr06:29937849..29937873 (25 bp)
AACTCTGGAGACTTGCGCGAGCAGC
LOC_Os06g49410
OsAffx.28188.1.S1_at--14--8072Chr06:29937855..29937879 (25 bp)
GGAGACTTGCGCGAGCAGCCATTCC
LOC_Os06g49410
OsAffx.28188.1.S1_at--1065--9152Chr06:29937862..29937886 (25 bp)
TGCGCGAGCAGCCATTCCGGAGTTC
LOC_Os06g49410
Target Sequence
AAGCATTGTTCCTAGGGATAACCCGGTTCCAGTCTACCCCGATCTGGAAATCTCTCGCTCCACCTCGATGCTAGTACTTC
GTCTGCTTTGCGATAGCCGAAAGAGATTGACCAAGGCAGCTCGGCGTGGTTTCGACACCATTGCAACCCTCGTCGCCTGG
ACAATCTGGAAAGAGAGGAATAGCAGCGTTTTCAATCAGCAGCAAAAGACTTGGGCGGAAGTGGCAAGGGCAATGGCCGC
CGAAGCAGAACTCTGGAGACTTGCGCGAGCAGCCATTCCGGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis