Browse Element(s) Details


Os.53902.1.S1_x_at

Description gb:AK100720.1
DB_XREF= gi:32985929
TID=Os.53902.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53902 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023116F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116F01, full insert sequence.
FL= gb:AK100720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4938011/11NB-ARC domain containing protein, expressed
LOC_Os06g493901/11NB-ARC domain containing protein, expressed
LOC_Os06g493601/11NB-ARC domain containing protein, expressed
LOC_Os06g393601/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49350NANA6+29896282..29903445retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49360Os.49229.1.S1_at8/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49360Os.53902.1.S1_x_at1/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49370Os.38172.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified
LOC_Os06g49370Os.43567.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified
LOC_Os06g49380Os.53902.1.S1_x_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49380OsAffx.15995.1.S1_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_s_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390Os.53902.1.S1_x_at1/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49399OsAffx.2793.1.S1_at1/116+29933384..29934106NA
LOC_Os06g49410OsAffx.28188.1.S1_at11/116+29937346..29937934hypothetical protein
LOC_Os06g49410OsAffx.30123.1.S1_at3/116+29937346..29937934hypothetical protein
LOC_Os06g49420OsAffx.15996.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S2_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.57318.1.S1_at11/116+29938761..29947042NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53902.1.S1_x_at--341--8951Chr06:29921109..29921133 (25 bp)
TGACTATCTATCTTTCCATCTACAA
LOC_Os06g49380
Os.53902.1.S1_x_at--38--2092Chr06:29929113..29929137 (25 bp)
ACATATTGTGCTTTGTTCCCTGAAG
LOC_Os06g49390
Os.53902.1.S1_x_at--263--5191Chr06:29921007..29921031 (25 bp)
GCAAGGCATTTTACATTCCCAGGAT
LOC_Os06g49380
Os.53902.1.S1_x_at--864--1291Chr06:29920899..29920923 (25 bp)
AGATGGGTCACCTTACTACACTATG
LOC_Os06g49380
Os.53902.1.S1_x_at--753--2011Chr06:29920885..29920909 (25 bp)
ACTACACTATGCATGACCTACTACA
LOC_Os06g49380
Os.53902.1.S1_x_at--340--5833Chr06:29920871..29920895 (25 bp)
GACCTACTACATGAGTTAGCATTGA
LOC_Os06g49380
Os.53902.1.S1_x_at--1074--751Chr06:29920802..29920826 (25 bp)
ATGTCTATGCAAATTCCGCCATCTA
LOC_Os06g49380
Os.53902.1.S1_x_at--265--4311Chr06:29920784..29920808 (25 bp)
CCATCTATACGGCACTTATCTATTG
LOC_Os06g49380
Os.53902.1.S1_x_at--736--8071Chr06:29920746..29920770 (25 bp)
GGACGTAAACGACAGAGCAACTTTT
LOC_Os06g49380
Os.53902.1.S1_x_at--35--5311Chr06:29920710..29920734 (25 bp)
GAAGGATTTTGGCACACTAAGTAAG
LOC_Os06g49380
Os.53902.1.S1_x_at--627--6271Chr06:29920679..29920703 (25 bp)
GATGTCGAAAAGCTACACTCTCTAA
LOC_Os06g49380
Target Sequence 
TGACTATCTATCTTTCCATCTACAACAATGTTTCACATATTGTGCTTTGTTCCCTGAAGATTACAAGTTTGATAGTGAGG
AGATGATTCACTTGTGGATAGGGCAAGGCATTTTACATTCCCAGGATGAAAACAAAACAATTGAAGATATTGGGTTGAGA
TATTTGAATGATTTGGTTAATTATGGATTTTTCATAAAAGATGTGAATGAAGATGGGTCACCTTACTACACTATGCATGA
CCTACTACATGAGTTAGCATTGAAGGTTTCATCATATGAATATCTTTCTATAAGTAATACTAAAGTAATGTCTATGCAAA
TTCCGCCATCTATACGGCACTTATCTATTGTGATAGATGACATGGACGTAAACGACAGAGCAACTTTTGAAAATATTAAG
AAGGATTTTGGCACACTAAGTAAGAGGCTTGATGTCGAAAAGCTACACTCTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53902.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis