Browse Element(s) Details


Os.49229.1.S1_at

Description gb:AK066341.1
DB_XREF= gi:32976359
TID=Os.49229.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063P11, full insert sequence.
FL= gb:AK067727.1 gb:AK066341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g493608/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49310OsAffx.28185.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49310Os.28142.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49320Os.11586.1.S1_at11/116+29882510..29885305glycosyltransferase, putative, expressed
LOC_Os06g49330OsAffx.28186.2.S1_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49330OsAffx.28186.2.S1_x_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49340Os.51658.1.S1_at11/116+29890032..29891909F-box domain containing protein, expressed
LOC_Os06g49350NANA6+29896282..29903445retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49360Os.49229.1.S1_at8/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49360Os.53902.1.S1_x_at1/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49370Os.38172.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified
LOC_Os06g49370Os.43567.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified
LOC_Os06g49380Os.53902.1.S1_x_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49380OsAffx.15995.1.S1_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_s_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390Os.53902.1.S1_x_at1/116+29925783..29930823NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49229.1.S1_at--1068--131Chr06:29904773..29904797 (25 bp)
AGGACGGTTATTGAGAAATCACCTT
LOC_Os06g49360
Os.49229.1.S1_at--15--5991Chr06:29904761..29904785 (25 bp)
GAGAAATCACCTTGACTTGGAGCAT
LOC_Os06g49360
Os.49229.1.S1_at--210--8131Chr06:29904556..29904580 (25 bp)
GGACTAGACATATTACAATCGCGGA
LOC_Os06g49360
Os.49229.1.S1_at--290--1411Chr06:29904551..29904575 (25 bp)
AGACATATTACAATCGCGGAATCAA
LOC_Os06g49360
Os.49229.1.S1_at--942--7211Chr06:29904517..29904541 (25 bp)
GTCGAAGAGATAGGACTGAGCTATT
LOC_Os06g49360
Os.49229.1.S1_at--807--5491Chr06:29904452..29904476 (25 bp)
GAACAAAAATGGGTCTCCGTACTAT
LOC_Os06g49360
Os.49229.1.S1_at--911--7691Chr06:29904442..29904466 (25 bp)
GGGTCTCCGTACTATACAATGCATG
LOC_Os06g49360
Os.49229.1.S1_at--445--7411Chr06:29904307..29904331 (25 bp)
GTGATAGACGACACGGATGTAAATC
LOC_Os06g49360
Os.49229.1.S1_at--413--6291NONE
GATGTTGAAAAACTCCAGTCTTTGA
NONE
Os.49229.1.S1_at--256--2511NONE
AACTCCAGTCTTTGATAAGGGTTTG
NONE
Os.49229.1.S1_at--874--7851NONE
GGTTTGGATCAATATCCATGGGAGC
NONE
Target Sequence 
AGGACGGTTATTGAGAAATCACCTTGACTTGGAGCATTGGACAAGTGTCCTCGAAAGTAGAGAATGGGAACTGCAANCCG
GTGAGAATGATATTATGCCAGCGCTAAAGCTTAGCTATGACTATCTCCCTTTTCATNTACAGCATTGTTTTACATATTGT
GCTCTGTTCCCTGAAGATTACAGATTTGAAAGTGACGAGATGATTCACTTGTGGATAGGACTAGACATATTACAATCGCG
GAATCAANACAAAAAAGTCGAAGAGATAGGACTGAGCTATTTGAATGATTTGGTTAATTATGGATTTTTTAGAAAAGACA
TGAACAAAAATGGGTCTCCGTACTATACAATGCATGACCTNCTACATGAGTTAGCACTAAAGGTTTCATCATATGAATAT
CTTGCTATAAGTAGTTNTAGTGTGAGAAGTGTGCAAATTCCNCCATNTGTANGACATTTGTCTATTGTGATAGACGACAC
GGATGTAAATCATAGAGTGACTTTTGAAAATGTTAAGAAGGATTTTAGCACTNTACATAAGAGATTAGATGTTGAAAAAC
TCCAGTCTTTGATAAGGGTTTGGATCAATATCCATGGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis