Browse Element(s) Details


OsAffx.28186.2.S1_at

Description tigr:9634.m04806
TID=OsAffx.28186.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4933011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49280NANA6+29868312..29868752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g49290NANA6+29870180..29870777transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g49300OsAffx.28184.2.S1_at11/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49300OsAffx.28184.1.S1_x_at4/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49310OsAffx.28185.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49310Os.28142.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49320Os.11586.1.S1_at11/116+29882510..29885305glycosyltransferase, putative, expressed
LOC_Os06g49330OsAffx.28186.2.S1_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49330OsAffx.28186.2.S1_x_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49340Os.51658.1.S1_at11/116+29890032..29891909F-box domain containing protein, expressed
LOC_Os06g49350NANA6+29896282..29903445retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49360Os.49229.1.S1_at8/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49360Os.53902.1.S1_x_at1/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49370Os.38172.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified
LOC_Os06g49370Os.43567.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28186.2.S1_at--889--10011Chr06:29889461..29889485 (25 bp)
TAGCAAGGATTCAGCTTCGGCAGGT
LOC_Os06g49330
OsAffx.28186.2.S1_at--1130--1471Chr06:29889460..29889484 (25 bp)
AGCAAGGATTCAGCTTCGGCAGGTC
LOC_Os06g49330
OsAffx.28186.2.S1_at--926--5171Chr06:29889459..29889483 (25 bp)
GCAAGGATTCAGCTTCGGCAGGTCC
LOC_Os06g49330
OsAffx.28186.2.S1_at--609--2911Chr06:29889457..29889481 (25 bp)
AAGGATTCAGCTTCGGCAGGTCCGG
LOC_Os06g49330
OsAffx.28186.2.S1_at--423--132Chr10:21045268..21045494 (25 bp)
ATTCAGCTTCGGCAGGTCCGGGACT
NONE
OsAffx.28186.2.S1_at--695--8352Chr10:21045143..21045176 (25 bp)
GGCGGCGAGGGCACAACAGCGATGA
NONE
OsAffx.28186.2.S1_at--784--8231Chr06:29889368..29889392 (25 bp)
GGCACAACAGCGATGAGCAGGATGA
LOC_Os06g49330
OsAffx.28186.2.S1_at--120--2491Chr06:29889363..29889387 (25 bp)
AACAGCGATGAGCAGGATGATTCCG
LOC_Os06g49330
OsAffx.28186.2.S1_at--507--3391Chr06:29889361..29889385 (25 bp)
CAGCGATGAGCAGGATGATTCCGGC
LOC_Os06g49330
OsAffx.28186.2.S1_at--296--9911Chr06:29889189..29889213 (25 bp)
TACTCCTGCTGCCAACTTCCCGAGC
LOC_Os06g49330
OsAffx.28186.2.S1_at--17--3251Chr06:29888978..29889002 (25 bp)
CAAGCTATTGCTCCAAGGTCCACCG
LOC_Os06g49330
Target Sequence 
TAGCAAGGATTCAGCTTCGGCAGGTCCGGGACTGGAGCGGCGCTGGCGCCACGGGAGATGGGGATGGTGGCGGGGCGAGG
GCATGGCGGCGAGGGCACAACAGCGATGAGCAGGATGATTCCGGCGACGATGGCGCGGGGCGGCCGTGGTGGGGAGGGAG
CGAGCCGGGCACGGTGGCACGAAGGAATGTGCGCGGCGGAGGACACCGAGCGCACCGAGGAGGAGGTGGAGGAGCGCAAG
AACGCTGCCGCCCCGGCGGCCACCGAGCCCCCTACTCCTGCTGCCAACTTCCCGAGCCTCCGCGAGGCCGCCGCGGGCAC
GGCTGGCGGCAAGTCCAAGAGGAAGAAGGGGCGGTCTCGCGGCGGACGTGGTCGGGGAGGGGGCCCGTGTCGGAGGAGGA
GGAGCTCCAGTCGCTGTTCCGCATCATGGCCAGGTCGACGCCGGAGCGCTCGAGGCCAGTCCGCCGCCGCGCGTTGGGGC
GTGCAAGCTATTGCTCCAAGGTCCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28186.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis