Browse Element(s) Details


Os.28142.1.S1_at

Description gb:AK066647.1
DB_XREF= gi:32976665
TID=Os.28142.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074A05, full insert sequence.
FL= gb:AK066647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4931011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49260NANA6+29849304..29854923Protein kinase domain containing protein
LOC_Os06g49270NANA6+29855654..29859637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g49280NANA6+29868312..29868752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g49290NANA6+29870180..29870777transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g49300OsAffx.28184.2.S1_at11/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49300OsAffx.28184.1.S1_x_at4/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49310OsAffx.28185.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49310Os.28142.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49320Os.11586.1.S1_at11/116+29882510..29885305glycosyltransferase, putative, expressed
LOC_Os06g49330OsAffx.28186.2.S1_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49330OsAffx.28186.2.S1_x_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49340Os.51658.1.S1_at11/116+29890032..29891909F-box domain containing protein, expressed
LOC_Os06g49350NANA6+29896282..29903445retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49360Os.49229.1.S1_at8/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49360Os.53902.1.S1_x_at1/116+29904062..29906316NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28142.1.S1_at--1012--691Chr06:29882723..29882747 (25 bp)
ATGATTAAGGCCACGATTGTCGGTT
LOC_Os06g49310
Os.28142.1.S1_at--720--7871Chr06:29882744..29882768 (25 bp)
GGTTATTTGGGCGTTTTCCACATAT
LOC_Os06g49310
Os.28142.1.S1_at--1124--1951Chr06:29882798..29882822 (25 bp)
ACTGATTATATCTCTGGGTCGGTTC
LOC_Os06g49310
Os.28142.1.S1_at--420--5711Chr06:29882839..29882863 (25 bp)
GAGGGAAACGGCTCCTTCAAGTTGT
LOC_Os06g49310
Os.28142.1.S1_at--1145--1231Chr06:29882858..29882882 (25 bp)
AGTTGTTTTACTGTCTTGTCGTGCA
LOC_Os06g49310
Os.28142.1.S1_at--1159--3991Chr06:29882877..29882901 (25 bp)
CGTGCAGTCTTTTTCTTGTGGGAAA
LOC_Os06g49310
Os.28142.1.S1_at--759--7691Chr06:29882928..29882952 (25 bp)
GGGTACCTGGGTTCATGGATTCTTT
LOC_Os06g49310
Os.28142.1.S1_at--90--1751Chr06:29882957..29882981 (25 bp)
ACCTTTTCTGTGGTGGTCTTGTTTG
LOC_Os06g49310
Os.28142.1.S1_at--620--7131Chr06:29882972..29882996 (25 bp)
GTCTTGTTTGGCAGTGCTTACCTTA
LOC_Os06g49310
Os.28142.1.S1_at--1076--1571Chr06:29882998..29883022 (25 bp)
AGCTCTTGCAAACTGGCTTCTCAGA
LOC_Os06g49310
Os.28142.1.S1_at--941--6791Chr06:29883064..29883088 (25 bp)
GTTTACCCTATGAGCTACAACTAAC
LOC_Os06g49310
Target Sequence 
ATGATTAAGGCCACGATTGTCGGTTATTTGGGCGTTTTCCACATATGATTGATGGCATCTAATGATCACATTTCTACTGA
TTATATCTCTGGGTCGGTTCAGTAATGAGGAAATGAGAGGGAAACGGCTCCTTCAAGTTGTTTTACTGTCTTGTCGTGCA
GTCTTTTTCTTGTGGGAAACAGTTCAACAACCACTGCAGCTTGTTGGGTACCTGGGTTCATGGATTCTTTTAAGACCTTT
TCTGTGGTGGTCTTGTTTGGCAGTGCTTACCTTAAAGCTCTTGCAAACTGGCTTCTCAGATGAACTCTGAATATTTCGTT
GTCTGTACAGGTAGTGTTTCAGTTTACCCTATGAGCTACAACTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis