Browse Element(s) Details


Os.11586.1.S1_at

Description gb:AK071568.1
DB_XREF= gi:32981591
TID=Os.11586.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023103D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023103D13, full insert sequence.
FL= gb:AK071568.1 gb:AK059411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4932011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49270NANA6+29855654..29859637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g49280NANA6+29868312..29868752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g49290NANA6+29870180..29870777transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g49300OsAffx.28184.2.S1_at11/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49300OsAffx.28184.1.S1_x_at4/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49310OsAffx.28185.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49310Os.28142.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49320Os.11586.1.S1_at11/116+29882510..29885305glycosyltransferase, putative, expressed
LOC_Os06g49330OsAffx.28186.2.S1_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49330OsAffx.28186.2.S1_x_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49340Os.51658.1.S1_at11/116+29890032..29891909F-box domain containing protein, expressed
LOC_Os06g49350NANA6+29896282..29903445retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49360Os.49229.1.S1_at8/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49360Os.53902.1.S1_x_at1/116+29904062..29906316NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11586.1.S1_at--1002--7571Chr06:29883963..29883987 (25 bp)
GGGCTCGAATGGCTCACCCGTGTCA
LOC_Os06g49320
Os.11586.1.S1_at--146--7451Chr06:29883944..29883968 (25 bp)
GTGTCACCTTCAAGGATCCAGCCAA
LOC_Os06g49320
Os.11586.1.S1_at--297--6091Chr06:29883897..29883921 (25 bp)
GAGTACAATGTCTCCTTCGACGAGA
LOC_Os06g49320
Os.11586.1.S1_at--780--6011Chr06:29883865..29883889 (25 bp)
GAGAGAGCTCTACCCGAGAGACCAT
LOC_Os06g49320
Os.11586.1.S1_at--786--191Chr06:29883842..29883866 (25 bp)
ATTTCTACATCCAGCATCCATACGA
LOC_Os06g49320
Os.11586.1.S1_at--133--2691Chr06:29883744..29883768 (25 bp)
AAGCTCACCAACACGCTGGAACGGG
LOC_Os06g49320
Os.11586.1.S1_at--32--2591Chr06:29883725..29883749 (25 bp)
AACGGGCGCGCGACTTCTTGCCAGA
LOC_Os06g49320
Os.11586.1.S1_at--1149--5991Chr06:29883653..29883677 (25 bp)
GAGAGCTCTTCTGTTTTTGATTCGC
LOC_Os06g49320
Os.11586.1.S1_at--868--7491Chr06:29883606..29883630 (25 bp)
GTGGTGAGATTCATTTCTTTCATTG
LOC_Os06g49320
Os.11586.1.S1_at--411--6391Chr06:29883552..29883576 (25 bp)
GATCGTGTCATAGACAAGTGTCCAA
LOC_Os06g49320
Os.11586.1.S1_at--439--7891Chr06:29883526..29883550 (25 bp)
GGTTAATTTACACTTGCACACTTTG
LOC_Os06g49320
Target Sequence 
GGGCTCGAATGGCTCACCCGTGTCACCTTCAAGGATCCAGCCAAGGACATGGATGTCAACTACATGGAGTACAATGTCTC
CTTCGACGAGAGCTCGCTGAGAGAGCTCTACCCGAGAGACCATTTCTACATCCAGCATCCATACGATGTGCACAAGAAAG
GCTGGGACGCCATCAAGACGGTGTACCTGGACAAGCAGAATGTGGAGCTCAACCTCACCAAGCTCACCAACACGCTGGAA
CGGGCGCGCGACTTCTTGCCAGAGCCCTGACACCATGGCTGGGGATCTTGATGATGCTGATGGTAGATAGGAGAGCTCTT
CTGTTTTTGATTCGCTTTTTTTCTCCTTCTTCTTCTTGTGGTGAGATTCATTTCTTTCATTGTTTTTTGATAAAAAGGAG
GAGACGAGTAAGATCGTGTCATAGACAAGTGTCCAAAGGTTAATTTACACTTGCACACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis