Browse Element(s) Details


Os.51658.1.S1_at

Description gb:AK101481.1
DB_XREF= gi:32986690
TID=Os.51658.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041C08, full insert sequence.
FL= gb:AK063291.1 gb:AK101481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4934011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49280NANA6+29868312..29868752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g49290NANA6+29870180..29870777transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g49300OsAffx.28184.2.S1_at11/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49300OsAffx.28184.1.S1_x_at4/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49310OsAffx.28185.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49310Os.28142.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49320Os.11586.1.S1_at11/116+29882510..29885305glycosyltransferase, putative, expressed
LOC_Os06g49330OsAffx.28186.2.S1_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49330OsAffx.28186.2.S1_x_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49340Os.51658.1.S1_at11/116+29890032..29891909F-box domain containing protein, expressed
LOC_Os06g49350NANA6+29896282..29903445retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49360Os.49229.1.S1_at8/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49360Os.53902.1.S1_x_at1/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49370Os.38172.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified
LOC_Os06g49370Os.43567.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51658.1.S1_at--255--3511Chr06:29890524..29890548 (25 bp)
CATGGTCGCACGAGAGGTGCCACGA
LOC_Os06g49340
Os.51658.1.S1_at--407--5451Chr06:29890371..29890395 (25 bp)
GAACGCCAATCCGTCAGTCTGAATT
LOC_Os06g49340
Os.51658.1.S1_at--1090--10151Chr06:29890301..29890325 (25 bp)
TATCTTCATTTCTTCAGCATCTGCA
LOC_Os06g49340
Os.51658.1.S1_at--342--2531Chr06:29890272..29890296 (25 bp)
AACTTTTTGTTGACCTGCTTGCTGC
LOC_Os06g49340
Os.51658.1.S1_at--594--10371Chr06:29890234..29890258 (25 bp)
TTTTAGCTTCCGAATGCGTGGGTGA
LOC_Os06g49340
Os.51658.1.S1_at--391--2591Chr06:29890205..29890229 (25 bp)
AACGTCTTGTTGACCTGTTTGCAAT
LOC_Os06g49340
Os.51658.1.S1_at--735--831Chr06:29890169..29890193 (25 bp)
ATGGATGTGCTTGTCAGTGTGAGAA
LOC_Os06g49340
Os.51658.1.S1_at--425--3051Chr06:29890137..29890161 (25 bp)
AATCTCTGGTTGACCTCTTGTAACA
LOC_Os06g49340
Os.51658.1.S1_at--518--6631Chr06:29890101..29890125 (25 bp)
GTTGTGGCCAAGACAGGTTGCCCTG
LOC_Os06g49340
Os.51658.1.S1_at--560--9171Chr06:29890083..29890107 (25 bp)
TGCCCTGTCAGGATCACAATGTACT
LOC_Os06g49340
Os.51658.1.S1_at--521--6491Chr06:29890039..29890063 (25 bp)
GATACCAGTGCCATCTGTGAGTTTT
LOC_Os06g49340
Target Sequence 
CATGGTCGCACGAGAGGTGCCACGAGGTGGTTCCCGACGTCGGCGTGCTCGACCTCGCCGACGGGAGCTACAANGTGCCA
CGCGGCGCCGTGCGCGACCTGCTCTGGAAGTGGCCGCCGCCGGTGTGGGTCTTCCCTTCCTGCACCAACTGACGAACGCC
AATCCGTCAGTCTGAATTCTGAAATGTTCAGAGTTTTTTCCTTTTTTTCAGACAAAGTTCAGATATCTTCATTTCTTCAG
CATCTGCAGCTCAACTTTTTGTTGACCTGCTTGCTGCTTGTAAAAAGTTTTTTTAGCTTCCGAATGCGTGGGTGAGGTCA
ACGTCTTGTTGACCTGTTTGCAATAAGTTGTAAAAATGGATGTGCTTGTCAGTGTGAGAACGAGGTCAATCTCTGGTTGA
CCTCTTGTAACAACAAATTGCTAGTTGTGGCCAAGACAGGTTGCCCTGTCAGGATCACAATGTACTAATCTGGTTCATTA
TTCAAGATACCAGTGCCATCTGTGAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis