Browse Element(s) Details


OsAffx.15995.1.S1_at

Description tigr:9634.m04810
TID=OsAffx.15995.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4938011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49350NANA6+29896282..29903445retrotransposon protein, putative, unclassified, expressed
LOC_Os06g49360Os.49229.1.S1_at8/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49360Os.53902.1.S1_x_at1/116+29904062..29906316NB-ARC domain containing protein, expressed
LOC_Os06g49370Os.38172.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified
LOC_Os06g49370Os.43567.1.S1_x_at2/116+29910417..29912080transposon protein, putative, unclassified
LOC_Os06g49380Os.53902.1.S1_x_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49380OsAffx.15995.1.S1_at11/116+29918223..29923542NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_s_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390OsAffx.28187.1.S1_at11/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49390Os.53902.1.S1_x_at1/116+29925783..29930823NB-ARC domain containing protein, expressed
LOC_Os06g49399OsAffx.2793.1.S1_at1/116+29933384..29934106NA
LOC_Os06g49410OsAffx.28188.1.S1_at11/116+29937346..29937934hypothetical protein
LOC_Os06g49410OsAffx.30123.1.S1_at3/116+29937346..29937934hypothetical protein
LOC_Os06g49420OsAffx.15996.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S2_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.57318.1.S1_at11/116+29938761..29947042NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15995.1.S1_at--233--6031Chr06:29918775..29918799 (25 bp)
GAGAGGCATGGAGACTCTTGCTCCC
LOC_Os06g49380
OsAffx.15995.1.S1_at--174--1111Chr06:29918696..29918720 (25 bp)
AGTGGTGAGGGCTTGTCTTCTCTGC
LOC_Os06g49380
OsAffx.15995.1.S1_at--367--2251Chr06:29918627..29918651 (25 bp)
AAATTCTTCGTCAGGTCTGACCCCT
LOC_Os06g49380
OsAffx.15995.1.S1_at--431--8331Chr06:29918599..29918623 (25 bp)
GGCTGCAGCAGCTTCAAACGGATGA
LOC_Os06g49380
OsAffx.15995.1.S1_at--767--2571Chr06:29918583..29918607 (25 bp)
AACGGATGACATTGCAAGGGTCCTT
LOC_Os06g49380
OsAffx.15995.1.S1_at--342--3211Chr06:29918478..29918502 (25 bp)
CAAGGAGCAGAGTGAGGCCCTTCTG
LOC_Os06g49380
OsAffx.15995.1.S1_at--896--1191Chr06:29918428..29918452 (25 bp)
AGTTTTACTCCTGCCGGAAGCTGCA
LOC_Os06g49380
OsAffx.15995.1.S1_at--292--1951Chr06:29918393..29918417 (25 bp)
ACTGGGTTACACAGACTCGTCGGCC
LOC_Os06g49380
OsAffx.15995.1.S1_at--924--6031Chr06:29918357..29918381 (25 bp)
GAGATCGACTGGTGTCCAGCCATCT
LOC_Os06g49380
OsAffx.15995.1.S1_at--192--1691Chr06:29918340..29918364 (25 bp)
AGCCATCTGTTCACTGCCCAAGGGT
LOC_Os06g49380
OsAffx.15995.1.S1_at--1018--8451Chr06:29918316..29918340 (25 bp)
TGGCCTTCCGAGTTCATTGCAAGAA
LOC_Os06g49380
Target Sequence 
GAGAGGCATGGAGACTCTTGCTCCCCTCTCAAACCTCAGCTCTCTCACCAGATTAACCATATGGAAATGTATGGACTTAA
GTGGTGAGGGCTTGTCTTCTCTGCTCGACCATGGCCAACTCACAGACCTTCGCATCCAAATGACCCCCAAATTCTTCGTC
AGGTCTGACCCCTCGCGGCTGCAGCAGCTTCAAACGGATGACATTGCAAGGGTCCTTGCACCACCAATCTGCAGCCTCAT
TTCTTCATCACTCACCAAGCTAACCATTGGTTTTAATCATGAGGTGGAGCGCATCACCAAGGAGCAGAGTGAGGCCCTTC
TGCTCCTCTCCTCCCTCCAGGACCTCGAGTTTTACTCCTGCCGGAAGCTGCAGTCCCTCCCCACTGGGTTACACAGACTC
GTCGGCCTCAAGATATTAGAGATCGACTGGTGTCCAGCCATCTGTTCACTGCCCAAGGGTGGCCTTCCGAGTTCATTGCA
AGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis