Browse Element(s) Details

Os.24609.1.A1_s_at

Description

gb:AK102365.1
DB_XREF= gi:32987574
TID=Os.24609.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091K01, full insert sequence.
FL= gb:AK102365.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49440	11/11	Carboxylesterase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49390	OsAffx.28187.1.S1_s_at	11/11	6	+	29925783..29930823	NB-ARC domain containing protein, expressed
LOC_Os06g49390	OsAffx.28187.1.S1_at	11/11	6	+	29925783..29930823	NB-ARC domain containing protein, expressed
LOC_Os06g49390	Os.53902.1.S1_x_at	1/11	6	+	29925783..29930823	NB-ARC domain containing protein, expressed
LOC_Os06g49399	OsAffx.2793.1.S1_at	1/11	6	+	29933384..29934106	NA
LOC_Os06g49410	OsAffx.28188.1.S1_at	11/11	6	+	29937346..29937934	hypothetical protein
LOC_Os06g49410	OsAffx.30123.1.S1_at	3/11	6	+	29937346..29937934	hypothetical protein
LOC_Os06g49420	OsAffx.15996.1.S1_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.53727.1.S2_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.53727.1.S1_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.57318.1.S1_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49430	Os.7913.1.S1_a_at	11/11	6	+	29948900..29953876	Protein kinase domain containing protein, expressed
LOC_Os06g49440	Os.24609.1.A1_s_at	11/11	6	+	29954725..29959779	Carboxylesterase, putative, expressed
LOC_Os06g49440	Os.52405.1.S1_at	1/11	6	+	29954725..29959779	Carboxylesterase, putative, expressed
LOC_Os06g49450	Os.48739.1.S1_x_at	6/11	6	+	29960227..29966297	expressed protein
LOC_Os06g49460	Os.11864.1.S1_at	11/11	6	+	29967038..29969466	RER1B protein, putative, expressed
LOC_Os06g49470	OsAffx.15997.1.S1_s_at	11/11	6	+	29970113..29972187	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470	OsAffx.15997.1.S1_at	11/11	6	+	29970113..29972187	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49480	Os.11856.1.S1_at	11/11	6	+	29972847..29975324	Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os06g49490	Os.7425.1.S1_at	11/11	6	+	29975878..29976669	zinc finger family protein, putative, expressed
LOC_Os06g49500	Os.14849.1.S1_a_at	11/11	6	+	29977814..29980993	integral membrane family protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24609.1.A1_s_at--931--1079	1	Chr06:29955301..29955325 (25 bp)	TTGTTCCTGAATTCATGCTTATGCT	LOC_Os06g49440
Os.24609.1.A1_s_at--70--13	1	Chr06:29955291..29955315 (25 bp)	ATTCATGCTTATGCTTGCTGGAAGA	LOC_Os06g49440
Os.24609.1.A1_s_at--467--171	1	Chr06:29955240..29955264 (25 bp)	ACCAGTGATGGCAGCTATGTATATA	LOC_Os06g49440
Os.24609.1.A1_s_at--47--23	1	Chr06:29955218..29955242 (25 bp)	ATATTCAATGCAAGGATTGAGCCCA	LOC_Os06g49440
Os.24609.1.A1_s_at--689--455	1	Chr06:29955181..29955205 (25 bp)	GCTCCCGGATTAGCTAGCAGCTAGT	LOC_Os06g49440
Os.24609.1.A1_s_at--87--1007	1	Chr06:29955147..29955171 (25 bp)	TAGTGTTCCAATTAAGATGCCAAAT	LOC_Os06g49440
Os.24609.1.A1_s_at--583--1047	1	Chr06:29955136..29955160 (25 bp)	TTAAGATGCCAAATGTACCCCTTCG	LOC_Os06g49440
Os.24609.1.A1_s_at--627--329	1	Chr06:29955127..29955151 (25 bp)	CAAATGTACCCCTTCGTTGAGTAGC	LOC_Os06g49440
Os.24609.1.A1_s_at--1000--309	1	Chr06:29954841..29954865 (25 bp)	AATAGAGTTGCTCGCAGTACTGGAA	LOC_Os06g49440
Os.24609.1.A1_s_at--970--851	1	Chr06:29954803..29954827 (25 bp)	TGGAAGACGTTTCATCTGCGCACTT	LOC_Os06g49440
Os.24609.1.A1_s_at--425--949	1	Chr06:29954789..29954813 (25 bp)	TCTGCGCACTTGAAGATGTCTGTGT	LOC_Os06g49440

Target Sequence

TTGTTCCTGAATTCATGCTTATGCTTGCTGGAAGAGTTAGTCCTTTCTGATTATGTTGGCGACCAGTGATGGCAGCTATG
TATATATTCAATGCAAGGATTGAGCCCAGAGAAATCTGCTGCTCCCGGATTAGCTAGCAGCTAGTCAGTTAGTGTAGTGT
TCCAATTAAGATGCCAAATGTACCCCTTCGTTGAGTAGCTACCCGCCAGTATGTACAGATCTTGCCTCAGACGTCTGTCA
TTGACTCATTGTTGTATTGTATCTTAAGGTCTAGCTCATTATGCTTTAGTAACACATAACTTGATATCTTATGAAGCTCT
GTTTGGACAAGGGTCAATCTGAGGAGAGAGCTTGTTGTGAATTGGAAGAATATTGTGAAGACAACTGTTNTGACCGAAGA
AAATCGTCATGAGATGTCTCCTGCCTTTCTGTAATTCAGTAGTCAGTAAATTCAGCTCCCAATAGAGTTGCTCGCAGTAC
TGGAATGGAGGGGTGTTNTGGAAGACGTTTCATCTGCGCACTTGAAGATGTCTGTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis