Browse Element(s) Details


Os.11864.1.S1_at

Description gb:AU031793
DB_XREF= gi:3767766
DB_XREF=AU031793
CLONE=R1782_6Z
TID=Os.11864.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11864 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_195633.1 (A.thaliana) AtRer1A (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4946011/11RER1B protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49420OsAffx.15996.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S2_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.53727.1.S1_x_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49420Os.57318.1.S1_at11/116+29938761..29947042NB-ARC domain containing protein, expressed
LOC_Os06g49430Os.7913.1.S1_a_at11/116+29948900..29953876Protein kinase domain containing protein, expressed
LOC_Os06g49440Os.24609.1.A1_s_at11/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49440Os.52405.1.S1_at1/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49450Os.48739.1.S1_x_at6/116+29960227..29966297expressed protein
LOC_Os06g49460Os.11864.1.S1_at11/116+29967038..29969466RER1B protein, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_s_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49480Os.11856.1.S1_at11/116+29972847..29975324Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os06g49490Os.7425.1.S1_at11/116+29975878..29976669zinc finger family protein, putative, expressed
LOC_Os06g49500Os.14849.1.S1_a_at11/116+29977814..29980993integral membrane family protein, putative, expressed
LOC_Os06g49510Os.9402.1.S1_at11/116+29989036..29993453Zinc knuckle family protein, expressed
LOC_Os06g49520Os.10011.1.S1_at11/116+29993594..29995122D-isomer specific 2-hydroxyacid dehydrogenases, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006890biological_processretrograde vesicle-mediated transport, Golgi to ER
GO:0005794cellular_componentGolgi apparatus
GO:0005801cellular_componentGolgi cis-face
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11864.1.S1_at--848--4531Chr06:29969044..29969068 (25 bp)
GCCCGGGAGCCAGTACGTCTAAAGA
LOC_Os06g49460
Os.11864.1.S1_at--97--8911Chr06:29969070..29969094 (25 bp)
TGAGACCTGGATTGCAGATCCCTGT
LOC_Os06g49460
Os.11864.1.S1_at--1--1291Chr06:29969085..29969109 (25 bp)
AGATCCCTGTGTTGCTCTTGAGGCA
LOC_Os06g49460
Os.11864.1.S1_at--937--7871Chr06:29969125..29969149 (25 bp)
GGTTTTTTGGTACCAGCTACTGACA
LOC_Os06g49460
Os.11864.1.S1_at--870--5651Chr06:29969146..29969170 (25 bp)
GACAGTGGATGTACACCTCCATTCG
LOC_Os06g49460
Os.11864.1.S1_at--1044--5691Chr06:29969193..29969217 (25 bp)
GACTTTGCATCGGTTGATGACCATT
LOC_Os06g49460
Os.11864.1.S1_at--777--9571Chr06:29969235..29969259 (25 bp)
TCTTCTGTGCAATGACTCGTTCATT
LOC_Os06g49460
Os.11864.1.S1_at--1115--171Chr06:29969257..29969281 (25 bp)
ATTTATAGTTCTTGTGCTGTGCGGC
LOC_Os06g49460
Os.11864.1.S1_at--728--9131Chr06:29969276..29969300 (25 bp)
TGCGGCTCTTGTGTGGACGAGTAAT
LOC_Os06g49460
Os.11864.1.S1_at--260--5211Chr06:29969364..29969388 (25 bp)
GAATTCAACATGCTCGTTTCCAGAC
LOC_Os06g49460
Os.11864.1.S1_at--220--7571Chr06:29969390..29969414 (25 bp)
GGGCCCTTAATTACTCGCATGTTAG
LOC_Os06g49460
Target Sequence 
GCCCGGGAGCCAGTACGTCTAAAGACTGAGACCTGGATTGCAGATCCCTGTGTTGCTCTTGAGGCAACATGCTGGCATGG
TGGTTTTTTGGTACCAGCTACTGACAGTGGATGTACACCTCCATTCGCTAGTCGAGAGGAGCTTAAAGAGACTTTGCATC
GGTTGATGACCATTTGTGTTGTATATCAGATTCTTCTGTGCAATGACTCGTTCATTTATAGTTCTTGTGCTGTGCGGCTC
TTGTGTGGACGAGTAATGAACCTATTGAGTCAGGTGCAATGCAAATCAAAACTATTGGGGCTTGACATGGATTTGTACTG
GAATTCAACATGCTCGTTTCCAGACGGGGCCCTTAATTACTCGCATGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis