Browse Element(s) Details

OsAffx.15997.1.S1_at

Description

tigr:9634.m04819
TID=OsAffx.15997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peptidylprolyl isomerase (EC 5.2.1.8) ROC7 (similarity) - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49470	11/11	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49420	OsAffx.15996.1.S1_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.53727.1.S2_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.53727.1.S1_x_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49420	Os.57318.1.S1_at	11/11	6	+	29938761..29947042	NB-ARC domain containing protein, expressed
LOC_Os06g49430	Os.7913.1.S1_a_at	11/11	6	+	29948900..29953876	Protein kinase domain containing protein, expressed
LOC_Os06g49440	Os.24609.1.A1_s_at	11/11	6	+	29954725..29959779	Carboxylesterase, putative, expressed
LOC_Os06g49440	Os.52405.1.S1_at	1/11	6	+	29954725..29959779	Carboxylesterase, putative, expressed
LOC_Os06g49450	Os.48739.1.S1_x_at	6/11	6	+	29960227..29966297	expressed protein
LOC_Os06g49460	Os.11864.1.S1_at	11/11	6	+	29967038..29969466	RER1B protein, putative, expressed
LOC_Os06g49470	OsAffx.15997.1.S1_s_at	11/11	6	+	29970113..29972187	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470	OsAffx.15997.1.S1_at	11/11	6	+	29970113..29972187	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49480	Os.11856.1.S1_at	11/11	6	+	29972847..29975324	Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os06g49490	Os.7425.1.S1_at	11/11	6	+	29975878..29976669	zinc finger family protein, putative, expressed
LOC_Os06g49500	Os.14849.1.S1_a_at	11/11	6	+	29977814..29980993	integral membrane family protein, putative, expressed
LOC_Os06g49510	Os.9402.1.S1_at	11/11	6	+	29989036..29993453	Zinc knuckle family protein, expressed
LOC_Os06g49520	Os.10011.1.S1_at	11/11	6	+	29993594..29995122	D-isomer specific 2-hydroxyacid dehydrogenases, putative, expressed
LOC_Os06g49530	Os.17021.1.S1_at	10/11	6	+	29995313..29998223	F-box domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006457	biological_process	protein folding
GO:0005624	cellular_component	membrane fraction
GO:0005829	cellular_component	cytosol
GO:0003755	molecular_function	peptidyl-prolyl cis-trans isomerase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15997.1.S1_at--688--321	1	Chr06:29971419..29971443 (25 bp)	CAAGGAGGCGACACCGTGAGCGGCA	LOC_Os06g49470
OsAffx.15997.1.S1_at--732--459	1	Chr06:29971426..29971450 (25 bp)	GCGACACCGTGAGCGGCAATGGAAC	LOC_Os06g49470
OsAffx.15997.1.S1_at--703--673	1	Chr06:29971679..29971703 (25 bp)	GTTCTTCATCACCACCGTAAAGCTA	LOC_Os06g49470
OsAffx.15997.1.S1_at--964--1053	2	Chr06:29971680..29971704 (25 bp)	TTCTTCATCACCACCGTAAAGCTAA	LOC_Os06g49470
OsAffx.15997.1.S1_at--793--953	2	Chr06:29971681..29971705 (25 bp)	TCTTCATCACCACCGTAAAGCTAAC	LOC_Os06g49470
OsAffx.15997.1.S1_at--957--731	1	Chr06:29971871..29971895 (25 bp)	GTGCTTTCTGGAATGGACGTCGTCT	LOC_Os06g49470
OsAffx.15997.1.S1_at--185--907	1	Chr06:29971872..29971896 (25 bp)	TGCTTTCTGGAATGGACGTCGTCTA	LOC_Os06g49470
OsAffx.15997.1.S1_at--170--489	1	Chr06:29971873..29971897 (25 bp)	GCTTTCTGGAATGGACGTCGTCTAC	LOC_Os06g49470
OsAffx.15997.1.S1_at--1153--367	1	Chr06:29971874..29971898 (25 bp)	CTTTCTGGAATGGACGTCGTCTACA	LOC_Os06g49470
OsAffx.15997.1.S1_at--413--1029	1	Chr06:29971875..29971899 (25 bp)	TTTCTGGAATGGACGTCGTCTACAA	LOC_Os06g49470
OsAffx.15997.1.S1_at--962--943	1	Chr06:29971877..29971901 (25 bp)	TCTGGAATGGACGTCGTCTACAAGA	LOC_Os06g49470

Target Sequence

CAAGGAGGCGACACCGTGAGCGGCAATGGAACCGGCTGTGATTCGATCTATGGTGGAATGTTCCCTGATGAGAACTTCAA
GATCAACCACTCTGCACCAGGGTTGCTGTCCATGGCCAACTATGCGAAAGATACAAACGGATCCCAGTTCTTCATCACCA
CCGTAAAGCTAACCCGGTTGGATGGGAAGCATGTTGTGTTTGGCAAGGTGCTTTCTGGAATGGACGTCGTCTACAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis