Browse Element(s) Details

Os.9402.1.S1_at

Description

gb:AK100402.1
DB_XREF= gi:32985611
TID=Os.9402.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086O10, full insert sequence.
FL= gb:AK100402.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49510	11/11	Zinc knuckle family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49450	Os.48739.1.S1_x_at	6/11	6	+	29960227..29966297	expressed protein
LOC_Os06g49460	Os.11864.1.S1_at	11/11	6	+	29967038..29969466	RER1B protein, putative, expressed
LOC_Os06g49470	OsAffx.15997.1.S1_s_at	11/11	6	+	29970113..29972187	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470	OsAffx.15997.1.S1_at	11/11	6	+	29970113..29972187	Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49480	Os.11856.1.S1_at	11/11	6	+	29972847..29975324	Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os06g49490	Os.7425.1.S1_at	11/11	6	+	29975878..29976669	zinc finger family protein, putative, expressed
LOC_Os06g49500	Os.14849.1.S1_a_at	11/11	6	+	29977814..29980993	integral membrane family protein, putative, expressed
LOC_Os06g49510	Os.9402.1.S1_at	11/11	6	+	29989036..29993453	Zinc knuckle family protein, expressed
LOC_Os06g49520	Os.10011.1.S1_at	11/11	6	+	29993594..29995122	D-isomer specific 2-hydroxyacid dehydrogenases, putative, expressed
LOC_Os06g49530	Os.17021.1.S1_at	10/11	6	+	29995313..29998223	F-box domain containing protein, expressed
LOC_Os06g49540	Os.14919.1.S1_at	7/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class
LOC_Os06g49540	Os.56216.1.S1_at	2/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class
LOC_Os06g49540	OsAffx.29313.1.S1_at	1/11	6	+	29999124..30005104	transposon protein, putative, Mutator sub-class
LOC_Os06g49550	Os.30616.1.S1_s_at	11/11	6	+	30007095..30009588	transposon protein, putative, unclassified, expressed
LOC_Os06g49550	OsAffx.28189.1.S1_at	11/11	6	+	30007095..30009588	transposon protein, putative, unclassified, expressed
LOC_Os06g49560	OsAffx.25936.7.S1_s_at	11/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.1.S1_s_at	11/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.2.S1_x_at	4/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49560	OsAffx.25936.5.S1_x_at	2/11	6	+	30011987..30015025	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49570	NA	NA	6	+	30016944..30017561	hypothetical protein
LOC_Os06g49580	Os.10827.1.S1_x_at	10/11	6	+	30018079..30021366	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g49580	Os.46055.2.S1_x_at	5/11	6	+	30018079..30021366	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006396	biological_process	RNA processing
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9402.1.S1_at--714--103	1	Chr06:29989383..29989407 (25 bp)	AGGTGAACTGGCACTACTCTGATTC	LOC_Os06g49510
Os.9402.1.S1_at--183--201	1	Chr06:29989368..29989392 (25 bp)	ACTCTGATTCAAGTGCTTCTGATTA	LOC_Os06g49510
Os.9402.1.S1_at--486--653	1	Chr06:29989348..29989372 (25 bp)	GATTATTCAAACTCCGAACGGCACT	LOC_Os06g49510
Os.9402.1.S1_at--809--545	1	Chr06:29989333..29989357 (25 bp)	GAACGGCACTATAGTCATCGCCATC	LOC_Os06g49510
Os.9402.1.S1_at--921--689	1	Chr06:29989286..29989310 (25 bp)	GTATAATCTGCATGATGTCTCCACA	LOC_Os06g49510
Os.9402.1.S1_at--488--887	1	Chr06:29989274..29989298 (25 bp)	TGATGTCTCCACAGAAGATCGCTCT	LOC_Os06g49510
Os.9402.1.S1_at--89--639	1	Chr06:29989258..29989282 (25 bp)	GATCGCTCTGCCGTTTATATGATGT	LOC_Os06g49510
Os.9402.1.S1_at--8--713	1	Chr06:29989214..29989238 (25 bp)	GTCATTTTCTTAAGGCCACCAGGGT	LOC_Os06g49510
Os.9402.1.S1_at--913--861	1	Chr06:29989178..29989202 (25 bp)	TGGTGTTTGGTGACTGCAGCTGCTA	LOC_Os06g49510
Os.9402.1.S1_at--794--197	1	Chr06:29989166..29989190 (25 bp)	ACTGCAGCTGCTAATCGACTTGTGA	LOC_Os06g49510
Os.9402.1.S1_at--959--879	1	Chr06:29989083..29989107 (25 bp)	TGTTGTAGGCTTGTACCCGAGGGAC	LOC_Os06g49510

Target Sequence

AGGTGAACTGGCACTACTCTGATTCAAGTGCTTCTGATTATTCAAACTCCGAACGGCACTATAGTCATCGCCATCGTAGA
AGAAAATGAGCAGTGTTGTATAATCTGCATGATGTCTCCACAGAAGATCGCTCTGCCGTTTATATGATGTCATTAGCTAC
ATATGCTTGGTCATTTTCTTAAGGCCACCAGGGTCCACGGGTTGCTGGTGTTTGGTGACTGCAGCTGCTAATCGACTTGT
GATGCGATAGTAATGTATGTGACTGAATTTTGTCTTCTGTAGAAGAATTGTTGTGCCTTTTGTTGTAGGCTTGTACCCGA
GGGAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis