Browse Element(s) Details


OsAffx.24091.1.S1_at

Description tigr:9630.m00315
TID=OsAffx.24091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0411010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04050NANA2+1758439..1764006SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04060NANA2+1766071..1767766SMC family, C-terminal domain containing protein
LOC_Os02g04070NANA2+1768220..1772620retrotransposon protein, putative, unclassified
LOC_Os02g04080NANA2+1773173..1779320SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04090OsAffx.15996.1.S1_x_at4/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04090OsAffx.27850.1.A1_at1/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04100Os.12193.1.S1_at11/112+1784573..1788080Proteasome subunit alpha type 1, putative, expressed
LOC_Os02g04110Os.54956.1.S1_at11/112+1788746..1792353expressed protein
LOC_Os02g04110OsAffx.24091.1.S1_at10/112+1788746..1792353expressed protein
LOC_Os02g04120NANA2+1793713..1796926Cytidylyltransferase family protein, expressed
LOC_Os02g04130Os.27915.1.S1_at11/112+1799750..1800811expressed protein
LOC_Os02g04130OsAffx.25637.1.S1_at1/112+1799750..1800811expressed protein
LOC_Os02g04140NANA2+1803724..1807030retrotransposon protein, putative, unclassified
LOC_Os02g04150NANA2+1807655..1813810retrotransposon protein, putative, unclassified
LOC_Os02g04160Os.12228.1.S1_at11/112+1816334..1819090expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24091.1.S1_at--201--8991Chr02:1789453..1789477 (25 bp)
TGAAGTGTTTCAAACCGGACAAGAA
LOC_Os02g04110
OsAffx.24091.1.S1_at--43--10091Chr02:1789483..1789507 (25 bp)
TAGGTTGGAATTATTACATGCGCAT
LOC_Os02g04110
OsAffx.24091.1.S1_at--235--2111Chr02:1789498..1789642 (25 bp)
ACATGCGCATGGTTTGGTTGATAAA
LOC_Os02g04110
OsAffx.24091.1.S1_at--1034--6451Chr02:1790132..1790156 (25 bp)
GATAATTTTCCATTTCTGCCTTGCC
LOC_Os02g04110
OsAffx.24091.1.S1_at--957--3571Chr02:1790142..1790166 (25 bp)
CATTTCTGCCTTGCCTAGAAGTCAG
LOC_Os02g04110
OsAffx.24091.1.S1_at--1063--9991Chr02:1790157..1790181 (25 bp)
TAGAAGTCAGAAATCCCCTAGTGGA
LOC_Os02g04110
OsAffx.24091.1.S1_at--444--111Chr02:1790196..1790220 (25 bp)
ATTCGGTGATCTGTGGTCATGCCAT
LOC_Os02g04110
OsAffx.24091.1.S1_at--443--8491Chr02:1790226..1790250 (25 bp)
TGGCTATATATGAGAACTTCGCTAT
LOC_Os02g04110
OsAffx.24091.1.S1_at--868--2051Chr02:1790241..1790265 (25 bp)
ACTTCGCTATCAAATTTCTTTCCAG
LOC_Os02g04110
OsAffx.24091.1.S1_at--748--10551Chr02:1790256..1790280 (25 bp)
TTCTTTCCAGATATGGTGCTATACT
LOC_Os02g04110
OsAffx.24091.1.S1_at--860--6251NONE
GATGTAAACAAGCACCTTTTCTATG
NONE
Target Sequence 
TGAAGTGTTTCAAACCGGACAAGAAGTTGATAGGTTGGAATTATTACATGCGCATGGTTTGGTTGATAAAAACGTGGTTG
ATAGAGTGAAAGATAATTTTCCATTTCTGCCTTGCCTAGAAGTCAGAAATCCCCTAGTGGAGGTTTTATTTGATAATTCG
GTGATCTGTGGTCATGCCATTCACATGGCTATATATGAGAACTTCGCTATCAAATTTCTTTCCAGATATGGTGCTATACT
TGAGAATCTACAATCAAGAGCTGATATAATTGAGAGGATACGGGGATGCATTGTAGATTCTGCACCAGTTCTGGAGATAA
GACCAGAGGTCTGGGCTGCTGGATTCTCTGCTGCCATGTTGAAGAAAAGCAGTTCCATGACAGGACCTTCAGTTGAATCT
CCTGATGGATATACTTCAAATGGCACCTTGAACAACCTTAGCTCTGATGTGACGAGACCAACATGGGGTGAAAATATTCT
TCTATCTACTCTACAGAAATTCTTCGAGATTGTCCTTCATCTACCTGATGTAAACAAGCACCTTTTCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis