Browse Element(s) Details


OsAffx.24092.1.S1_at

Description tigr:9630.m00325
TID=OsAffx.24092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0419011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04150NANA2+1807655..1813810retrotransposon protein, putative, unclassified
LOC_Os02g04160Os.12228.1.S1_at11/112+1816334..1819090expressed protein
LOC_Os02g04170Os.26922.1.S1_at11/112+1821867..1826372L-aspartate oxidase family protein, expressed
LOC_Os02g04180Os.55811.1.S1_at11/112+1826720..1829317transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g04190OsAffx.24092.1.S1_at11/112+1837868..1839002expressed protein
LOC_Os02g04200Os.35344.18.S1_x_at11/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200Os.35344.3.S1_x_at9/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200OsAffx.22940.5.S1_x_at3/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04210Os.52879.1.S1_at11/112+1848217..1848878expressed protein
LOC_Os02g04220NANA2+1849862..1850173hypothetical protein
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04240OsAffx.24094.1.S1_at11/112+1860049..1864473Wee1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24092.1.S1_at--991--10711Chr02:1838795..1838819 (25 bp)
TTGCTGCTCATCCTGCTGACGTCAG
LOC_Os02g04190
OsAffx.24092.1.S1_at--31--9671Chr02:1838753..1838777 (25 bp)
TCAGCGGAGTCCGAGATCGGCAGAT
LOC_Os02g04190
OsAffx.24092.1.S1_at--1090--1291Chr02:1838732..1838756 (25 bp)
AGATGCTACGATGACTGCTTGCCTG
LOC_Os02g04190
OsAffx.24092.1.S1_at--1146--8931Chr02:1838721..1838745 (25 bp)
TGACTGCTTGCCTGACTGCGAGCAA
LOC_Os02g04190
OsAffx.24092.1.S1_at--459--5951Chr02:1838702..1838726 (25 bp)
GAGCAAGGCAGTTCTCGAGCTGGCT
LOC_Os02g04190
OsAffx.24092.1.S1_at--1037--4771Chr02:1838656..1838680 (25 bp)
GCTGCGTCTTGAAGCCGATTCACAA
LOC_Os02g04190
OsAffx.24092.1.S1_at--984--6551Chr02:1838640..1838664 (25 bp)
GATTCACAACTGTACCCGAGGCGGC
LOC_Os02g04190
OsAffx.24092.1.S1_at--53--651Chr02:1838575..1838599 (25 bp)
ATGCAGGCTGCAGGGAGCTCTGCAC
LOC_Os02g04190
OsAffx.24092.1.S1_at--749--1071Chr02:1838564..1838588 (25 bp)
AGGGAGCTCTGCACGTCGTCGATCG
LOC_Os02g04190
OsAffx.24092.1.S1_at--916--3951Chr02:1838082..1838550 (25 bp)
CGGAGAATCAGCACGGGCAACAGAT
LOC_Os02g04190
OsAffx.24092.1.S1_at--1118--611Chr02:1838059..1838083 (25 bp)
ATGCTGATGTTGCAGCTTGTGTCGA
LOC_Os02g04190
Target Sequence 
TTGCTGCTCATCCTGCTGACGTCAGGCCAGCTGCAGCTGGCGTCAGCGGAGTCCGAGATCGGCAGATGCTACGATGACTG
CTTGCCTGACTGCGAGCAAGGCAGTTCTCGAGCTGGCTGCAAGCTCTTCTGCTTCACCTGCTGCGTCTTGAAGCCGATTC
ACAACTGTACCCGAGGCGGCGAGTCGACGGCGGCGGCGGCGGCGCCGGTGTTCGCCGGAGATGCAGGCTGCAGGGAGCTC
TGCACGTCGTCGATCGGGGATGCGGCAACCGGAGAATCAGCACGGGCAACAGATGCTGATGTTGCAGCTTGTGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis