Browse Element(s) Details


Os.2356.1.S1_a_at

Description gb:AY524973.1
DB_XREF= gi:42528296
GEN=BIMK2
TID=Os.2356.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2356 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) benzothiadiazole-induced MAP kinase 2 (BIMK2) mRNA, complete cds.
PROD=benzothiadiazole-induced MAP kinase 2
FL= gb:AY524973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0423011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04170Os.26922.1.S1_at11/112+1821867..1826372L-aspartate oxidase family protein, expressed
LOC_Os02g04180Os.55811.1.S1_at11/112+1826720..1829317transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g04190OsAffx.24092.1.S1_at11/112+1837868..1839002expressed protein
LOC_Os02g04200Os.35344.18.S1_x_at11/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200Os.35344.3.S1_x_at9/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200OsAffx.22940.5.S1_x_at3/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04210Os.52879.1.S1_at11/112+1848217..1848878expressed protein
LOC_Os02g04220NANA2+1849862..1850173hypothetical protein
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04240OsAffx.24094.1.S1_at11/112+1860049..1864473Wee1, putative, expressed
LOC_Os02g04250Os.5398.2.S1_x_at11/112+1872678..1874820glycosyltransferase, putative, expressed
LOC_Os02g04260Os.8321.1.S1_at11/112+1879002..1882475expressed protein
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2356.1.S1_a_at--1105--1331Chr02:1851610..1851634 (25 bp)
AGAGTGCTAGTATCAGTGCTTCAAC
LOC_Os02g04230
Os.2356.1.S1_a_at--123--2991Chr02:1851337..1851361 (25 bp)
AATGTGACCAGGATGCTCTCCTAGG
LOC_Os02g04230
Os.2356.1.S1_a_at--56--10091Chr02:1851316..1851340 (25 bp)
TAGGGCATCAGTAACCAGCGTTCAG
LOC_Os02g04230
Os.2356.1.S1_a_at--314--411Chr02:1851243..1851267 (25 bp)
ATCAGTATCATGGATCCTTGCCTAT
LOC_Os02g04230
Os.2356.1.S1_a_at--895--5891Chr02:1851212..1851236 (25 bp)
GAGCTGATACTCTAGGCTCTTAGCT
LOC_Os02g04230
Os.2356.1.S1_a_at--1012--8311Chr02:1851198..1851222 (25 bp)
GGCTCTTAGCTTATATCACCTATTG
LOC_Os02g04230
Os.2356.1.S1_a_at--909--6611Chr02:1851138..1851162 (25 bp)
GTTGTCTTTGTCAATTCGAGGCCAA
LOC_Os02g04230
Os.2356.1.S1_a_at--689--5151Chr02:1851108..1851132 (25 bp)
GCAACTCGGCTTGTTGTACATGCAT
LOC_Os02g04230
Os.2356.1.S1_a_at--346--7031Chr02:1851093..1851117 (25 bp)
GTACATGCATTTTCCTCATAGCCTG
LOC_Os02g04230
Os.2356.1.S1_a_at--936--7471Chr02:1851065..1851089 (25 bp)
GTGTGTGATGACTCTATCTGCCATA
LOC_Os02g04230
Os.2356.1.S1_a_at--149--3071Chr02:1851036..1851060 (25 bp)
CAATCTGGCACTTTTTTACCTTAGT
LOC_Os02g04230
Target Sequence 
AGAGTGCTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAGGAGAATGGTATCTCTGAGGACATG
GAAGAGGTTGTCTATGAGTTGTCAGATAATGTGACCAGGATGCTCTCCTAGGGCATCAGTAACCAGCGTTCAGCCGGCCA
TGATCTTGATGCAATTCCAAATTCCAATAACTGTTTATACCATCAGTATCATGGATCCTTGCCTATATCTATGAGCTGAT
ACTCTAGGCTCTTAGCTTATATCACCTATTGATCATCTTCCAAAAGCATCAAGCTTGGAGAAATGAGTTGTCTTTGTCAA
TTCGAGGCCAAATTTGGCAACTCGGCTTGTTGTACATGCATTTTCCTCATAGCCTGGCAGTGTGTGATGACTCTATCTGC
CATATGAACAATCTGGCACTTTTTTACCTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2356.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis