Browse Element(s) Details


Os.8321.1.S1_at

Description gb:AK069843.1
DB_XREF= gi:32979867
TID=Os.8321.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034H09, full insert sequence.
FL= gb:AK069843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0426011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04240OsAffx.24094.1.S1_at11/112+1860049..1864473Wee1, putative, expressed
LOC_Os02g04250Os.5398.2.S1_x_at11/112+1872678..1874820glycosyltransferase, putative, expressed
LOC_Os02g04260Os.8321.1.S1_at11/112+1879002..1882475expressed protein
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed
LOC_Os02g04280Os.47130.4.A1_x_at3/112+1889869..1890192retrotransposon protein, putative, unclassified
LOC_Os02g04290NANA2+1891132..1894155retrotransposon protein, putative, unclassified
LOC_Os02g04300NANA2+1894992..1897289retrotransposon protein, putative, unclassified
LOC_Os02g04310NANA2+1898854..1900969retrotransposon protein, putative, unclassified
LOC_Os02g04320Os.8830.1.S1_at11/112+1902990..1905136SEC13-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8321.1.S1_at--558--8151Chr02:1879575..1879599 (25 bp)
GGAAATCTTGCTATGCTTGCTGAAC
LOC_Os02g04260
Os.8321.1.S1_at--859--4911Chr02:1879561..1879585 (25 bp)
GCTTGCTGAACGCTTTCTACATGAG
LOC_Os02g04260
Os.8321.1.S1_at--334--8851Chr02:1879441..1879465 (25 bp)
TGATCTGTTGGGTTCCTTCTGTAAA
LOC_Os02g04260
Os.8321.1.S1_at--665--5731Chr02:1879376..1879400 (25 bp)
GACGTACTCTCCCAAGGTTACAGAA
LOC_Os02g04260
Os.8321.1.S1_at--1106--10791Chr02:1879289..1879313 (25 bp)
TTGTACTGTGCTTATCCGATGCTTT
LOC_Os02g04260
Os.8321.1.S1_at--65--3791Chr02:1879247..1879271 (25 bp)
CTGAGCTTATGTGAAACGCCGTTGC
LOC_Os02g04260
Os.8321.1.S1_at--400--1831Chr02:1879232..1879256 (25 bp)
ACGCCGTTGCTGTTTGTGTAGAATC
LOC_Os02g04260
Os.8321.1.S1_at--874--10551Chr02:1879192..1879216 (25 bp)
TTCTAACTTGGGAGCTGTTTCAGCA
LOC_Os02g04260
Os.8321.1.S1_at--907--6351Chr02:1879148..1879172 (25 bp)
GATGCCATCCCTAGATCATTGTAAT
LOC_Os02g04260
Os.8321.1.S1_at--75--6331Chr02:1879114..1879138 (25 bp)
GATGCTAGCTAGCTGGTCCTAAAAA
LOC_Os02g04260
Os.8321.1.S1_at--809--2271Chr02:1879092..1879116 (25 bp)
AAATCGTGTGGCTGGAGCCTCTTTT
LOC_Os02g04260
Target Sequence 
GGAAATCTTGCTATGCTTGCTGAACGCTTTCTACATGAGGNTGGCATTTAAGCTNCTGGAAAGCTCCTAAATATGGAGCT
TAAATCTGCCTGAGAAGATCCTCTCTAAATAAGGCGCGAAAATAATAAAAAGAGAATGATCTGTTGGGTTCCTTCTGTAA
ATGGGAACTGCAGATATTGCAAATAGATGAGTTTTGGAGGAGACGTACTCTCCCAAGGTTACAGAATTGATAAAGGAGAT
GCTGATAAACTGAAAACTAGTACGGTTTTTACTGAATTGATGGGAGATTTGTACTGTGCTTATCCGATGCTTTTGAACGG
AGGAACTTTCCTGAGCTTATGTGAAACGCCGTTGCTGTTTGTGTAGAATCCATTTACTTGAAACTTTCTAACTTGGGAGC
TGTTTCAGCACTGATATCAGTATCTGACTGATGCCATCCCTAGATCATTGTAATTTAATTCTTGATGCTAGCTAGCTGGT
CCTAAAAATCGTGTGGCTGGAGCCTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis