Browse Element(s) Details


Os.5398.2.S1_x_at

Description gb:AK119583.1
DB_XREF= gi:37989206
TID=Os.5398.2
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5398 (NCBI UniGene Cluster)
UG_TITLE=Microsatellite 23CAC sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C05, full insert sequence.
FL= gb:AK119583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0425011/11glycosyltransferase, putative, expressed
LOC_Os10g350201/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04210Os.52879.1.S1_at11/112+1848217..1848878expressed protein
LOC_Os02g04220NANA2+1849862..1850173hypothetical protein
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04240OsAffx.24094.1.S1_at11/112+1860049..1864473Wee1, putative, expressed
LOC_Os02g04250Os.5398.2.S1_x_at11/112+1872678..1874820glycosyltransferase, putative, expressed
LOC_Os02g04260Os.8321.1.S1_at11/112+1879002..1882475expressed protein
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed
LOC_Os02g04280Os.47130.4.A1_x_at3/112+1889869..1890192retrotransposon protein, putative, unclassified
LOC_Os02g04290NANA2+1891132..1894155retrotransposon protein, putative, unclassified
LOC_Os02g04300NANA2+1894992..1897289retrotransposon protein, putative, unclassified
LOC_Os02g04310NANA2+1898854..1900969retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5398.2.S1_x_at--399--8731Chr02:1874255..1874279 (25 bp)
TGTCACCTTCAAGAATCCGGCGAAA
LOC_Os02g04250
Os.5398.2.S1_x_at--17--991Chr02:1874320..1874344 (25 bp)
AGGAGAGCTCGCTGATCGATCAGTA
LOC_Os02g04250
Os.5398.2.S1_x_at--426--4591Chr02:1874348..1874372 (25 bp)
GCGCAATCACCAGGTGCTCACTGAT
LOC_Os02g04250
Os.5398.2.S1_x_at--790--9952Chr02:1874376..1874400 (25 bp)
TACGCCGTGCACAAGCAAGGCTGGG
LOC_Os02g04250
Os.5398.2.S1_x_at--340--3231Chr02:1874408..1874432 (25 bp)
CAAGACGGCGTACCTGGACAAGCAG
LOC_Os02g04250
Os.5398.2.S1_x_at--712--1451Chr02:1874461..1874485 (25 bp)
AGAAGACATTGCAGGAGGCGCTCGA
LOC_Os02g04250
Os.5398.2.S1_x_at--942--6671Chr02:1874489..1874513 (25 bp)
GTTGCCGCCAGCATGAGAGCTTGAT
LOC_Os02g04250
Os.5398.2.S1_x_at--818--10851Chr02:1874572..1874596 (25 bp)
TTGGTGTATCTATCTGTGCCTTCTC
LOC_Os02g04250
Os.5398.2.S1_x_at--9--7291Chr02:1874587..1874611 (25 bp)
GTGCCTTCTCTTGCTTAACTTATTT
LOC_Os02g04250
Os.5398.2.S1_x_at--975--8951Chr02:1874619..1874643 (25 bp)
TGAAATTCTTTTTACGCCTTCTTCT
LOC_Os02g04250
Os.5398.2.S1_x_at--175--9631Chr02:1874708..1874732 (25 bp)
TCATGTTACATATGCCTAGCTGATG
LOC_Os02g04250
Target Sequence 
TGTCACCTTCAAGAATCCGGCGAAAGACATGGAGNTCACCTACATGGATTACAATGTGCAGCTGGAGGAGAGCTCGCTGA
TCGATCAGTACCCGCGCAATCACCAGGTGCTCACTGATCCCTACGCCGTGCACAAGCAAGGCTGGGACGCGCTCAAGACG
GCGTACCTGGACAAGCAGAACATCAAGATGGACATGGACAGGTTCAAGAAGACATTGCAGGAGGCGCTCGACAGGTTGCC
GCCAGCATGAGAGCTTGATGAACTGATGAAAGCTCAAGCCCACNGAGGTGGTGGTGGTGGTGGTGGTAGATAGATAGGTT
GGTGTATCTATCTGTGCCTTCTCTTGCTTAACTTATTTTTCCTTTTGAAATTCTTTTTACGCCTTCTTCTTCCTTTANCN
ACATTCATTTGATCTGTTGTTTTGGAAAANAAAAAAAGAGGATGAACAAGAACATCATGTTACATATGCCTAGCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5398.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis