Browse Element(s) Details


OsAffx.2501.1.S1_at

Description tigr:9630.m00330
TID=OsAffx.2501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g042309/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04170Os.26922.1.S1_at11/112+1821867..1826372L-aspartate oxidase family protein, expressed
LOC_Os02g04180Os.55811.1.S1_at11/112+1826720..1829317transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g04190OsAffx.24092.1.S1_at11/112+1837868..1839002expressed protein
LOC_Os02g04200Os.35344.18.S1_x_at11/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200Os.35344.3.S1_x_at9/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04200OsAffx.22940.5.S1_x_at3/112+1840804..1846851transposon protein, putative, Mutator sub-class
LOC_Os02g04210Os.52879.1.S1_at11/112+1848217..1848878expressed protein
LOC_Os02g04220NANA2+1849862..1850173hypothetical protein
LOC_Os02g04230Os.2356.1.S1_a_at11/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230OsAffx.2501.1.S1_at9/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.26442.1.S1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04230Os.27431.1.A1_at1/112+1850954..1858223Protein kinase domain containing protein, expressed
LOC_Os02g04240OsAffx.24094.1.S1_at11/112+1860049..1864473Wee1, putative, expressed
LOC_Os02g04250Os.5398.2.S1_x_at11/112+1872678..1874820glycosyltransferase, putative, expressed
LOC_Os02g04260Os.8321.1.S1_at11/112+1879002..1882475expressed protein
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2501.1.S1_at--473--1831Chr02:1858631..1858652 (22 bp)
ACGCCCAGCTCAGGAACGAGGTGGT
NONE
OsAffx.2501.1.S1_at--815--5171NONE
GCAAGTACTATAAGGTGGCTTCTGG
NONE
OsAffx.2501.1.S1_at--357--8491Chr02:1857581..1857605 (25 bp)
TGGCTTCTGGTGTTGGTATTTTGCA
LOC_Os02g04230
OsAffx.2501.1.S1_at--213--7871Chr02:1857567..1857591 (25 bp)
GGTATTTTGCAACAGGATGATCTTT
LOC_Os02g04230
OsAffx.2501.1.S1_at--806--2491Chr02:1857557..1857581 (25 bp)
AACAGGATGATCTTTTCTCCCGCTC
LOC_Os02g04230
OsAffx.2501.1.S1_at--450--4811Chr02:1857536..1857560 (25 bp)
GCTCTGCTTGTGCTTTCCAAGTGCT
LOC_Os02g04230
OsAffx.2501.1.S1_at--566--4931Chr02:1857531..1857555 (25 bp)
GCTTGTGCTTTCCAAGTGCTTGAAT
LOC_Os02g04230
OsAffx.2501.1.S1_at--362--10751Chr02:1857512..1857536 (25 bp)
TTGAATATATTCTTACCGTGCCATG
LOC_Os02g04230
OsAffx.2501.1.S1_at--995--10191Chr02:1857507..1857531 (25 bp)
TATATTCTTACCGTGCCATGGCAAA
LOC_Os02g04230
OsAffx.2501.1.S1_at--669--7271Chr02:1857495..1857519 (25 bp)
GTGCCATGGCAAAAGAATTATTCTG
LOC_Os02g04230
OsAffx.2501.1.S1_at--1028--7071Chr02:1857463..1857487 (25 bp)
GTCAATTGTGGTGGGCTATGGCTAT
LOC_Os02g04230
Target Sequence 
ACGCCCAGCTCAGGAACGAGGTGGTGGTGGTGGCACAGCAGAACAATTCCTTCAAATTCAGTGGTAGCAAGTACTATAAG
GTGGCTTCTGGTGTTGGTATTTTGCAACAGGATGATCTTTTCTCCCGCTCTGCTTGTGCTTTCCAAGTGCTTGAATATAT
TCTTACCGTGCCATGGCAAAAGAATTATTCTGTAGAATTGTCAATTGTGGTGGGCTATGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis