Browse Element(s) Details


Os.8830.1.S1_at

Description gb:AB055156.1
DB_XREF= gi:18147581
GEN=SEC13
TID=Os.8830.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8830 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for Sec13p, complete cds.
PROD=Sec13p
FL= gb:AK111559.1 gb:AK112028.1 gb:AK111732.1 gb:AB055156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0432011/11SEC13-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04260Os.8321.1.S1_at11/112+1879002..1882475expressed protein
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed
LOC_Os02g04280Os.47130.4.A1_x_at3/112+1889869..1890192retrotransposon protein, putative, unclassified
LOC_Os02g04290NANA2+1891132..1894155retrotransposon protein, putative, unclassified
LOC_Os02g04300NANA2+1894992..1897289retrotransposon protein, putative, unclassified
LOC_Os02g04310NANA2+1898854..1900969retrotransposon protein, putative, unclassified
LOC_Os02g04320Os.8830.1.S1_at11/112+1902990..1905136SEC13-related protein, putative, expressed
LOC_Os02g04330Os.22467.1.S1_at11/112+1909008..19128085'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os02g04340OsAffx.26812.1.S1_at11/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04340OsAffx.26812.2.S1_x_at6/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04350Os.23706.1.A1_x_at1/112+1917163..1919044retrotransposon protein, putative, unclassified
LOC_Os02g04360OsAffx.26942.1.S1_x_at11/112+1921049..1921726hypothetical protein
LOC_Os02g04360OsAffx.26942.1.S1_at10/112+1921049..1921726hypothetical protein
LOC_Os02g04370NANA2+1928681..1929055hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006900biological_processvesicle budding
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8830.1.S1_at--161--10091Chr02:1904542..1904566 (25 bp)
TAGGCCTCCCAAAGTCAACAATTGC
LOC_Os02g04320
Os.8830.1.S1_at--392--3171Chr02:1904561..1904585 (25 bp)
AATTGCAAGTGCCTCCCAGGATGGA
LOC_Os02g04320
Os.8830.1.S1_at--664--7671Chr02:1904635..1904659 (25 bp)
GGGTTCTCTATGATTTCCAGACACC
LOC_Os02g04320
Os.8830.1.S1_at--780--771Chr02:1904828..1904852 (25 bp)
ATGTGTAGCCTTCAGGCTGGCCAAT
LOC_Os02g04320
Os.8830.1.S1_at--753--2951Chr02:1904850..1904874 (25 bp)
AATGGCTCTCTGCTTACAATGTGGC
LOC_Os02g04320
Os.8830.1.S1_at--92--8331Chr02:1904872..1904896 (25 bp)
GGCTCTAGTAATTTTGCTTCTGCTC
LOC_Os02g04320
Os.8830.1.S1_at--1048--6071Chr02:1904932..1904956 (25 bp)
GAGTAGAAAACCCTTTGTGTCGCAA
LOC_Os02g04320
Os.8830.1.S1_at--11--10831Chr02:1904946..1904970 (25 bp)
TTGTGTCGCAACTCTTTCATGTATT
LOC_Os02g04320
Os.8830.1.S1_at--482--10831Chr02:1904981..1905005 (25 bp)
TTGTGTGCCTTCTGTTTACCATTAT
LOC_Os02g04320
Os.8830.1.S1_at--189--3871Chr02:1905017..1905041 (25 bp)
CTGAGTGCAGATTTTTCGCTATCCT
LOC_Os02g04320
Os.8830.1.S1_at--399--9151Chr02:1905041..1905065 (25 bp)
TGCGACTGTTTAATGCTGCCCGTAA
LOC_Os02g04320
Target Sequence 
TAGGCCTCCCAAAGTCAACAATTGCAAGTGCCTCCCAGGATGGAACGGTTGTAATCTGGACAGCACCGAAAGAAGGCGAG
CAGTGGGAAGGCAGGGTTCTCTATGATTTCCAGACACCTGTGTGGAGGTTATCCTGGTCATTGACTGGGAATATTCTGGC
AGTGTCTGATGGTAATGATAATGTGACCCTATGGAAAGAAGCCGTCGATGGCGAATGGCAGCAAGTGACCACTGTTGAGG
CTTAGGTGTTTTGAGTTGTTCTTCCCCTGGCTGCCAATTATAACATATGTGTAGCCTTCAGGCTGGCCAATGGCTCTCTG
CTTACAATGTGGCTCTAGTAATTTTGCTTCTGCTCAGCAATTAGCAAGGCGCAAGTAATTTGCTTGGATAGAGTAGAAAA
CCCTTTGTGTCGCAACTCTTTCATGTATTATGTGTTCCCTTGTGTGCCTTCTGTTTACCATTATTTATGGCACTTCTGAG
TGCAGATTTTTCGCTATCCTGCGACTGTTTAATGCTGCCCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis