Browse Element(s) Details


OsAffx.26942.1.S1_at

Description tigr:9630.m00348
TID=OsAffx.26942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0436010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04300NANA2+1894992..1897289retrotransposon protein, putative, unclassified
LOC_Os02g04310NANA2+1898854..1900969retrotransposon protein, putative, unclassified
LOC_Os02g04320Os.8830.1.S1_at11/112+1902990..1905136SEC13-related protein, putative, expressed
LOC_Os02g04330Os.22467.1.S1_at11/112+1909008..19128085'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os02g04340OsAffx.26812.1.S1_at11/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04340OsAffx.26812.2.S1_x_at6/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04350Os.23706.1.A1_x_at1/112+1917163..1919044retrotransposon protein, putative, unclassified
LOC_Os02g04360OsAffx.26942.1.S1_x_at11/112+1921049..1921726hypothetical protein
LOC_Os02g04360OsAffx.26942.1.S1_at10/112+1921049..1921726hypothetical protein
LOC_Os02g04370NANA2+1928681..1929055hypothetical protein
LOC_Os02g04380NANA2+1930708..1933214hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_x_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04400NANA2+1942710..1942973hypothetical protein
LOC_Os02g04410OsAffx.2503.1.S1_at11/112+1944550..1945719hypothetical protein
LOC_Os02g04420Os.11694.1.S1_x_at11/112+1946073..1949419expressed protein
LOC_Os02g04420Os.11694.2.S1_at11/112+1946073..1949419expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26942.1.S1_at--1120--4591Chr02:1921268..1921292 (25 bp)
GCGACGTCACCATGCCAAGGGAGGA
LOC_Os02g04360
OsAffx.26942.1.S1_at--917--4091Chr02:1921269..1921293 (25 bp)
CGACGTCACCATGCCAAGGGAGGAG
LOC_Os02g04360
OsAffx.26942.1.S1_at--326--5771Chr02:1921270..1921294 (25 bp)
GACGTCACCATGCCAAGGGAGGAGA
LOC_Os02g04360
OsAffx.26942.1.S1_at--321--4691Chr02:1921353..1921377 (25 bp)
GCGGCAACGCCATTGGACTACGGCA
LOC_Os02g04360
OsAffx.26942.1.S1_at--197--3951Chr02:1921354..1921378 (25 bp)
CGGCAACGCCATTGGACTACGGCAG
LOC_Os02g04360
OsAffx.26942.1.S1_at--44--8231Chr02:1921355..1921379 (25 bp)
GGCAACGCCATTGGACTACGGCAGG
LOC_Os02g04360
OsAffx.26942.1.S1_at--19--5171Chr02:1921356..1921380 (25 bp)
GCAACGCCATTGGACTACGGCAGGA
LOC_Os02g04360
OsAffx.26942.1.S1_at--779--3251Chr02:1921357..1921381 (25 bp)
CAACGCCATTGGACTACGGCAGGAA
LOC_Os02g04360
OsAffx.26942.1.S1_at--472--2611Chr02:1921358..1921382 (25 bp)
AACGCCATTGGACTACGGCAGGAAC
LOC_Os02g04360
OsAffx.26942.1.S1_at--196--1051Chr02:1921618..1921642 (25 bp)
AGGTGAGGGGAGGGATCTGGCCACG
LOC_Os02g04360
Target Sequence 
GCGACGTCACCATGCCAAGGGAGGAGACGGCAGCGTCGGCCGGCGCTTAGGCGCGACGACCGGGGCAGCTGGAGGCGGCA
CAGTGGCGGCAACGCCATTGGACTACGGCAGGAACGCGCCTCCGGTGGTTTCCCCGTGAAACGAAGGCGACGCCGGGGAA
GAGGATGCACCTGCGAGGCCGAGGATGGCGACGGCACGGCTGGCCGGCACACAGGCGAGGCGGCAGAGGCGGCTGGAGGT
GGCCGGCGGCACAGGATAGAGACGAGGGCGACGGGGAGAGGTGGTGCGGCCACGGGGAGACGCGGGAGGAGGCTAAAACG
AGAGAACGGAGGAAGGGGATTCCATTTTATAGGTGAGGGGAGGGATCTGGCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis