Browse Element(s) Details


Os.11694.1.S1_x_at

Description gb:AK070727.1
DB_XREF= gi:32980750
TID=Os.11694.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058D10, full insert sequence.
FL= gb:AK070727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0442011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04360OsAffx.26942.1.S1_x_at11/112+1921049..1921726hypothetical protein
LOC_Os02g04360OsAffx.26942.1.S1_at10/112+1921049..1921726hypothetical protein
LOC_Os02g04370NANA2+1928681..1929055hypothetical protein
LOC_Os02g04380NANA2+1930708..1933214hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_x_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04400NANA2+1942710..1942973hypothetical protein
LOC_Os02g04410OsAffx.2503.1.S1_at11/112+1944550..1945719hypothetical protein
LOC_Os02g04420Os.11694.1.S1_x_at11/112+1946073..1949419expressed protein
LOC_Os02g04420Os.11694.2.S1_at11/112+1946073..1949419expressed protein
LOC_Os02g04430Os.49798.1.S1_at11/112+1949825..1953397Leucine Rich Repeat family protein, expressed
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04450Os.11034.1.S1_at11/112+1967731..1972804uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os02g04460Os.27375.1.A1_at11/112+1972939..197466350S ribosomal protein L3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11694.1.S1_x_at--135--5951Chr02:1948176..1948200 (25 bp)
GAGCACGGCCTGTTCTATGGCCTCG
LOC_Os02g04420
Os.11694.1.S1_x_at--843--5611Chr02:1948140..1948164 (25 bp)
GACAACGTCCTATCTGCGTCTGATC
LOC_Os02g04420
Os.11694.1.S1_x_at--153--4651Chr02:1948125..1948149 (25 bp)
GCGTCTGATCTCATTAGCGGCGGGA
LOC_Os02g04420
Os.11694.1.S1_x_at--148--8071Chr02:1948103..1948127 (25 bp)
GGAGAAAGCCGGAGCAGCACAGCCT
LOC_Os02g04420
Os.11694.1.S1_x_at--258--911Chr02:1948052..1948076 (25 bp)
AGGCGTTGACGCAGGTGTCTTCCCA
LOC_Os02g04420
Os.11694.1.S1_x_at--21--4991Chr02:1947998..1948022 (25 bp)
GCATCGCCAGGTTCTTCGAGACCGG
LOC_Os02g04420
Os.11694.1.S1_x_at--605--5771Chr02:1947960..1947984 (25 bp)
GACGAACAACACAACCCGGAGCTGT
LOC_Os02g04420
Os.11694.1.S1_x_at--946--1651Chr02:1947908..1947932 (25 bp)
AGCGCTGCGACGACACTGGAGTGCT
LOC_Os02g04420
Os.11694.1.S1_x_at--437--6111Chr02:1947890..1947914 (25 bp)
GAGTGCTCCGCCTCGTGAAGCACAA
LOC_Os02g04420
Os.11694.1.S1_x_at--1000--9071Chr02:1947824..1947848 (25 bp)
TGCTTTAATCAGCTATTACTCCCTC
LOC_Os02g04420
Os.11694.1.S1_x_at--532--6511Chr02:1947664..1947688 (25 bp)
GATATCATTGGTTTTTCCTTGTAAA
LOC_Os02g04420
Target Sequence 
GAGCACGGCCTGTTCTATGGCCTCGCGTCCGGCACCGACAACGTCCTATCTGCGTCTGATCTCATTAGCGGCGGGAGAAA
GCCGGAGCAGCACAGCCTCCTTCCTCTGGAGTACACGCCGCCCAAGGCGTTGACGCAGGTGTCTTCCCACCTCGTGCACC
TGGGCTCTGCCAACTTCTGCATCGCCAGGTTCTTCGAGACCGGCTTCTTCGACGCCGACGAACAACACAACCCGGAGCTG
TTCGCTGTGTTCACCGCCGTCGAGGTGGAGCGCTGCGACGACACTGGAGTGCTCCGCCTCGTGAAGCACAAGTCGGAGAT
GTACAAGCTTATCAGCGAAATATATTATTGGGTGCTTTAATCAGCTATTACTCCCTCCGTTTCAGATTATATTTATTAAA
ATCAAATGCTTAATTTATATTGGGTCCGTGAGGGGACAGTAAAGTTCTTTGCTTAATTTATATTTCTTATTTCCCAATTT
CCTTGTAAATCAGATGATATATTTTGCTTGGAGATATCATTGGTTTTTCCTTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11694.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis