Browse Element(s) Details


OsAffx.2503.1.S1_at

Description tigr:9630.m00353
TID=OsAffx.2503.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0441011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04360OsAffx.26942.1.S1_x_at11/112+1921049..1921726hypothetical protein
LOC_Os02g04360OsAffx.26942.1.S1_at10/112+1921049..1921726hypothetical protein
LOC_Os02g04370NANA2+1928681..1929055hypothetical protein
LOC_Os02g04380NANA2+1930708..1933214hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_x_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04400NANA2+1942710..1942973hypothetical protein
LOC_Os02g04410OsAffx.2503.1.S1_at11/112+1944550..1945719hypothetical protein
LOC_Os02g04420Os.11694.1.S1_x_at11/112+1946073..1949419expressed protein
LOC_Os02g04420Os.11694.2.S1_at11/112+1946073..1949419expressed protein
LOC_Os02g04430Os.49798.1.S1_at11/112+1949825..1953397Leucine Rich Repeat family protein, expressed
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04450Os.11034.1.S1_at11/112+1967731..1972804uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2503.1.S1_at--730--7651Chr02:1945494..1945518 (25 bp)
GGGATGTGCGTGTCTGCCAATAGCA
LOC_Os02g04410
OsAffx.2503.1.S1_at--202--491Chr02:1945326..1945473 (25 bp)
ATCTGGATCCAATGGGTGCCGTTGA
LOC_Os02g04410
OsAffx.2503.1.S1_at--266--9211Chr02:1945282..1945306 (25 bp)
TGCCAAGAAGGCTGAACTCCACCAA
LOC_Os02g04410
OsAffx.2503.1.S1_at--827--8591Chr02:1945256..1945280 (25 bp)
TGGTCTACCACTCCTTTGGCAAGAT
LOC_Os02g04410
OsAffx.2503.1.S1_at--879--1271Chr02:1945235..1945259 (25 bp)
AGATCAGCCTCAACCTGGGACTGTG
LOC_Os02g04410
OsAffx.2503.1.S1_at--1156--6251Chr02:1944876..1944900 (25 bp)
GATGTGGAACATCTCTTCCTTAGCT
LOC_Os02g04410
OsAffx.2503.1.S1_at--133--232Chr02:27624140..27624164 (25 bp)
ATTTGGCACTCCTATGGACTCGATG
NONE
OsAffx.2503.1.S1_at--988--4151Chr02:1944712..1944736 (25 bp)
CGCCGCCGTTTGGAACATCTGGAAA
LOC_Os02g04410
OsAffx.2503.1.S1_at--713--8851Chr02:1944658..1944682 (25 bp)
TGATGAAGCCCACTCGGTAGTTCTT
LOC_Os02g04410
OsAffx.2503.1.S1_at--439--7851Chr02:1944643..1944667 (25 bp)
GGTAGTTCTTCATCGTTGCGCCAAC
LOC_Os02g04410
OsAffx.2503.1.S1_at--478--6874Chr05:18859999..18860021 (23 bp)
GTAGGCAAACAACAACTTCACTCTT
NONE
Target Sequence 
GGGATGTGCGTGTCTGCCAATAGCACGCATTCTGAAGCGTTAGATATCTGGATCCAATGGGTGCCGTTGAGGAGGGAAGG
TGTTGGAATTGCCAAGAAGGCTGAACTCCACCAATTGGTCTACCACTCCTTTGGCAAGATCAGCCTCAACCTGGGACTGT
GGCGGGTGCGACGCGGACTTGCAACTTCCGCGTGCTACCCCTTCTGCCCCATCGACGAAGATGTGGAACATCTCTTCCTT
AGCTGCTCCGGAGTGGCAGCCATTTGGCACTCCTATGGACTCGATGAACAACAAGTCGCCTCCCTAGCACATCTCGAAGA
CCTATGGGGTCTCCCTCCCCCTGACAATGCTCTCACCCCACGGATCTGGCGCACCATCTTACTCGCCGCCGTTTGGAACA
TCTGGAAACGCCACAACAACAAGATCTTCAACTCCATTGATGAAGCCCACTCGGTAGTTCTTCATCGTTGCGCCAACGAT
ATCGAATTGTGGTCAAACCGATGTAACGACGTTGTAGGCAAACAACAACTTCACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2503.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis