Browse Element(s) Details


Os.14475.1.S1_at

Description gb:AK111719.1
DB_XREF= gi:37988382
TID=Os.14475.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023G19, full insert sequence.
FL= gb:AK111719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0444010/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04380NANA2+1930708..1933214hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_x_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04400NANA2+1942710..1942973hypothetical protein
LOC_Os02g04410OsAffx.2503.1.S1_at11/112+1944550..1945719hypothetical protein
LOC_Os02g04420Os.11694.1.S1_x_at11/112+1946073..1949419expressed protein
LOC_Os02g04420Os.11694.2.S1_at11/112+1946073..1949419expressed protein
LOC_Os02g04430Os.49798.1.S1_at11/112+1949825..1953397Leucine Rich Repeat family protein, expressed
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04450Os.11034.1.S1_at11/112+1967731..1972804uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os02g04460Os.27375.1.A1_at11/112+1972939..197466350S ribosomal protein L3, chloroplast precursor, putative, expressed
LOC_Os02g04470NANA2+1976598..1976924retrotransposon protein, putative, unclassified
LOC_Os02g04480Os.17819.1.S1_at11/112+1979693..1983599Splicing factor 3B subunit 3, putative, expressed
LOC_Os02g04490Os.27735.1.A1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.9571.1.S1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.55210.1.S1_at1/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14475.1.S1_at--688--591Chr02:1964926..1964950 (25 bp)
ATGCCATGCCATTTGCCAATTGCCA
LOC_Os02g04440
Os.14475.1.S1_at--551--9551Chr02:1965094..1965118 (25 bp)
TCTTTCTACAGGATGTATGCTGCCT
LOC_Os02g04440
Os.14475.1.S1_at--370--631Chr02:1965110..1965134 (25 bp)
ATGCTGCCTGCATTTTTGTCTGGTG
LOC_Os02g04440
Os.14475.1.S1_at--1149--10811Chr02:1965125..1965149 (25 bp)
TTGTCTGGTGTGTAATCTTTTTCTA
LOC_Os02g04440
Os.14475.1.S1_at--738--3711Chr02:1965147..1965171 (25 bp)
CTACGGGATGTATGTCGCCTGCAAA
LOC_Os02g04440
Os.14475.1.S1_at--497--8711Chr02:1965159..1965183 (25 bp)
TGTCGCCTGCAAATCTTGATGCTGG
LOC_Os02g04440
Os.14475.1.S1_at--850--10771Chr02:1965174..1965198 (25 bp)
TTGATGCTGGACAGAGCCGCGTTGC
LOC_Os02g04440
Os.14475.1.S1_at--463--4631Chr02:1965192..1965216 (25 bp)
GCGTTGCGCCGTATCCTACAAAAGA
LOC_Os02g04440
Os.14475.1.S1_at--833--5791Chr02:1965215..1965239 (25 bp)
GACGCCGATGATTAGCATTGCTGAT
LOC_Os02g04440
Os.14475.1.S1_at--1138--7511Chr02:1965240..1965264 (25 bp)
GTGGCATCTGTACGGAGAACCTGAT
LOC_Os02g04440
Os.14475.1.S1_at--589--9091NONE
TGCTCTTTCTCGCTCAGCTCAAAAA
NONE
Target Sequence 
ATGCCATGCCATTTGCCAATTGCCATGTGGGAGGGAGGCCCTCTNCCTGGATGGACAATATCCGAAGCTGAAAGAGACCG
AGTGCCNCCCACTGGTCTCTACTACTCTTTGTAGANTGTCAACGTCTAGCTTTTNGCTTCNCCNATTTTTGTCTGGTGTG
AAGCTTTTTTTTTTTCTTTCTACAGGATGTATGCTGCCTGCATTTTTGTCTGGTGTGTAATCTTTTTCTACGGGATGTAT
GTCGCCTGCAAATCTTGATGCTGGACAGAGCCGCGTTGCGCCGTATCCTACAAAAGACGCCGATGATTAGCATTGCTGAT
GTGGCATCTGTACGGAGAACCTGATAATACTACTTGAAAGGGATAGGCATTNCNGGTGTTGTATTGTACTAGTAGGTGAG
GACGCTTGGCACNNGCAATACTTTTCTGTAAGAATATATATATCTGNACANTTTTTTATTGCTCTTTCTCGCTCAGCTCA
AAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis