Browse Element(s) Details


Os.27735.1.A1_at

Description gb:CB636214
DB_XREF= gi:29631205
DB_XREF=OSJNEa01G19.r
CLONE=OSJNEa01G19
TID=Os.27735.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27735 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T01055 (A.thaliana) T01055 hypothetical protein YUP8H12R.38 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0449011/11p300/CBP acetyltransferase-related protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04450Os.11034.1.S1_at11/112+1967731..1972804uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os02g04460Os.27375.1.A1_at11/112+1972939..197466350S ribosomal protein L3, chloroplast precursor, putative, expressed
LOC_Os02g04470NANA2+1976598..1976924retrotransposon protein, putative, unclassified
LOC_Os02g04480Os.17819.1.S1_at11/112+1979693..1983599Splicing factor 3B subunit 3, putative, expressed
LOC_Os02g04490Os.27735.1.A1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.9571.1.S1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.55210.1.S1_at1/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04500Os.54143.1.S1_at10/112+1998224..2000813S-adenosyl-methyltransferase MraW family protein, expressed
LOC_Os02g04510NANA2+2001938..2005401NmrA-like family protein
LOC_Os02g04520Os.8551.1.S1_s_at11/112+2007232..2009961expressed protein
LOC_Os02g04530OsAffx.2504.1.S1_at11/112+2011707..2018122NB-ARC domain containing protein
LOC_Os02g04540OsAffx.28180.1.S1_s_at2/112+2021090..2023354retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006358biological_processregulation of global transcription from RNA polymerase II promoter
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003712molecular_functiontranscription cofactor activity
GO:0004402molecular_functionhistone acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27735.1.A1_at--270--8671Chr02:1990463..1990487 (25 bp)
TGTGAAGATTGACCCACGACCACTG
LOC_Os02g04490
Os.27735.1.A1_at--971--2291Chr02:1990523..1990547 (25 bp)
AAATGTGCCCACAGCGAGACATAAT
LOC_Os02g04490
Os.27735.1.A1_at--659--9771Chr02:1990544..1990568 (25 bp)
TAATGTGGCACCTGGAGGCTCAAAT
LOC_Os02g04490
Os.27735.1.A1_at--33--5991Chr02:1990614..1990638 (25 bp)
GAGACAAGTGAGACTGCCCCTGAAG
LOC_Os02g04490
Os.27735.1.A1_at--788--5671Chr02:1990665..1990689 (25 bp)
GACATCACAGTTTCTAAATCAGGGA
LOC_Os02g04490
Os.27735.1.A1_at--157--3011Chr02:1990712..1990736 (25 bp)
AATGACTGAATTGTTCACCCCAGAA
LOC_Os02g04490
Os.27735.1.A1_at--447--191Chr02:1990756..1990780 (25 bp)
ATAGTCTAAGGCTGTGGGTTGGTCA
LOC_Os02g04490
Os.27735.1.A1_at--954--5931Chr02:1991385..1991409 (25 bp)
GAGAATTCATGCCAGCTCTGCAAAG
LOC_Os02g04490
Os.27735.1.A1_at--397--3191Chr02:1991437..1991461 (25 bp)
CAATATATTGCTCCCCTTGTGGTGC
LOC_Os02g04490
Os.27735.1.A1_at--758--5571Chr02:1991473..1991497 (25 bp)
GAAATGCACCATACTATACCGTTGG
LOC_Os02g04490
Os.27735.1.A1_at--242--1771Chr02:1991490..1991514 (25 bp)
ACCGTTGGTACTGGTGATACTCGCC
LOC_Os02g04490
Target Sequence 
TGTGAAGATTGACCCACGACCACTGCAGAAGCCTGCAAAGATTGGTTATGGTACTGATGGAAATGTGCCCACAGCGAGAC
ATAATGTGGCACCTGGAGGCTCAAATGAGATCAAGACTCATGTCAAGCAAGAAATCATGCCAATTGACAAAGAGACAAGT
GAGACTGCCCCTGAAGTTAAGAATGAAGCAAATGATTCAACAGACATCACAGTTTCTAAATCAGGGAAACCAAAGATAAA
AGGTGTCTCAATGACTGAATTGTTCACCCCAGAACAAATTCAGGAACATATCAATAGTCTAAGGCTGTGGGTTGGTCAGA
GTAAAGCTAAAGCTGAAAAGAATCAGTTGATGGGGCATAATGAAAATGAGAATTCATGCCAGCTCTGCAAAGTGGAAAAA
CTTACTTTTGAACCCCCACCAATATATTGCTCCCCTTGTGGTGCTCGGATAAAGCGAAATGCACCATACTATACCGTTGG
TACTGGTGATACTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27735.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis