Browse Element(s) Details


Os.11034.1.S1_at

Description gb:AK073353.1
DB_XREF= gi:32983376
TID=Os.11034.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025E21, full insert sequence.
FL= gb:AK073353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0445011/11uncharacterized plant-specific domain TIGR01589 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04400NANA2+1942710..1942973hypothetical protein
LOC_Os02g04410OsAffx.2503.1.S1_at11/112+1944550..1945719hypothetical protein
LOC_Os02g04420Os.11694.1.S1_x_at11/112+1946073..1949419expressed protein
LOC_Os02g04420Os.11694.2.S1_at11/112+1946073..1949419expressed protein
LOC_Os02g04430Os.49798.1.S1_at11/112+1949825..1953397Leucine Rich Repeat family protein, expressed
LOC_Os02g04440OsAffx.24097.1.S1_x_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440OsAffx.24097.1.S1_at11/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04440Os.14475.1.S1_at10/112+1955439..1965510transducin family protein, putative, expressed
LOC_Os02g04450Os.11034.1.S1_at11/112+1967731..1972804uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os02g04460Os.27375.1.A1_at11/112+1972939..197466350S ribosomal protein L3, chloroplast precursor, putative, expressed
LOC_Os02g04470NANA2+1976598..1976924retrotransposon protein, putative, unclassified
LOC_Os02g04480Os.17819.1.S1_at11/112+1979693..1983599Splicing factor 3B subunit 3, putative, expressed
LOC_Os02g04490Os.27735.1.A1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.9571.1.S1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.55210.1.S1_at1/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11034.1.S1_at--968--6091Chr02:1971180..1971204 (25 bp)
GAGTCTACTCCTGGAGACCATGCAG
LOC_Os02g04450
Os.11034.1.S1_at--186--7111Chr02:1972382..1972406 (25 bp)
GTCTATATTCGTGGCCATGGAACTC
LOC_Os02g04450
Os.11034.1.S1_at--551--71Chr02:1972426..1972450 (25 bp)
ATTGCTTCGTCAGTTTTAGGTCTTG
LOC_Os02g04450
Os.11034.1.S1_at--131--10451Chr02:1972441..1972465 (25 bp)
TTAGGTCTTGTTCTGTTGGACTACC
LOC_Os02g04450
Os.11034.1.S1_at--841--1711Chr02:1972463..1972487 (25 bp)
ACCAGCTTCGGTGACTTGTGTGAGA
LOC_Os02g04450
Os.11034.1.S1_at--110--6331Chr02:1972522..1972546 (25 bp)
GATGCAAGAAACCTATTGTCCCTGT
LOC_Os02g04450
Os.11034.1.S1_at--1158--31Chr02:1972536..1972560 (25 bp)
ATTGTCCCTGTGTCATTGCTGAAGA
LOC_Os02g04450
Os.11034.1.S1_at--668--2071Chr02:1972599..1972623 (25 bp)
ACATTGACATTTCGTGCTGTTGCAC
LOC_Os02g04450
Os.11034.1.S1_at--996--1211Chr02:1972651..1972675 (25 bp)
AGTTAACATTTTCCCTCTGTTGCAC
LOC_Os02g04450
Os.11034.1.S1_at--664--8811Chr02:1972668..1972692 (25 bp)
TGTTGCACTTGCTGCGGTTGGCCAT
LOC_Os02g04450
Os.11034.1.S1_at--265--5111Chr02:1972703..1972727 (25 bp)
GCACTCTTCGGTTGTTCAGACATGA
LOC_Os02g04450
Target Sequence 
GAGTCTACTCCTGGAGACCATGCAGAAATAGGAAATAGNNGGCTAGATACCATATCCGAGGGTGTTAGTTATGAAGATTT
TGGAAGCGATTAATCAGATATTGATGGTACTGCTTAAGGTTGAGCAGTGATGCATAACTTTGTACATAGTAGTTTGGGCA
AGTGAGTCTATATTCGTGGCCATGGAACTCAGCTAATTTCATGGAAACTATTGCTTCGTCAGTTTTAGGTCTTGTTCTGT
TGGACTACCAGCTTCGGTGACTTGTGTGAGAATATTTCATGGCCTAATAATGTGTCGCATTGACTGATGCAAGAAACCTA
TTGTCCCTGTGTCATTGCTGAAGATATTGTAGAAGTTAGCGTTAATGGTGACTGGAAGCTTTACATTGACATTTCGTGCT
GTTGCACTTGATGTGTAGTTTGTACATGATGCTTAGTTAACATTTTCCCTCTGTTGCACTTGCTGCGGTTGGCCATGTCG
CGCTCTGCACTCTTCGGTTGTTCAGACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis