Browse Element(s) Details


Os.54143.1.S1_at

Description gb:AK102168.1
DB_XREF= gi:32987377
TID=Os.54143.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086H14, full insert sequence.
FL= gb:AK102168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0450010/11S-adenosyl-methyltransferase MraW family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04460Os.27375.1.A1_at11/112+1972939..197466350S ribosomal protein L3, chloroplast precursor, putative, expressed
LOC_Os02g04470NANA2+1976598..1976924retrotransposon protein, putative, unclassified
LOC_Os02g04480Os.17819.1.S1_at11/112+1979693..1983599Splicing factor 3B subunit 3, putative, expressed
LOC_Os02g04490Os.27735.1.A1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.9571.1.S1_at11/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04490Os.55210.1.S1_at1/112+1986422..1997361p300/CBP acetyltransferase-related protein 2, putative, expressed
LOC_Os02g04500Os.54143.1.S1_at10/112+1998224..2000813S-adenosyl-methyltransferase MraW family protein, expressed
LOC_Os02g04510NANA2+2001938..2005401NmrA-like family protein
LOC_Os02g04520Os.8551.1.S1_s_at11/112+2007232..2009961expressed protein
LOC_Os02g04530OsAffx.2504.1.S1_at11/112+2011707..2018122NB-ARC domain containing protein
LOC_Os02g04540OsAffx.28180.1.S1_s_at2/112+2021090..2023354retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54143.1.S1_at--71--4991Chr02:2000256..2000280 (25 bp)
GCATGCTTTGATTGCCTAGCAACAG
LOC_Os02g04500
Os.54143.1.S1_at--385--5151Chr02:2000274..2000298 (25 bp)
GCAACAGATGGTCGCCTTGCAGTAA
LOC_Os02g04500
Os.54143.1.S1_at--170--9051Chr02:2000291..2000315 (25 bp)
TGCAGTAATCTCATTCCACAGTTTG
LOC_Os02g04500
Os.54143.1.S1_at--479--6951NONE
GTAGACCTTTCTGGAACTTATTCAT
NONE
Os.54143.1.S1_at--472--5052Chr02:2000518..2000542 (25 bp)
GCAGAAGTGCCAAGCTCAGAGTTAT
LOC_Os02g04500
Os.54143.1.S1_at--751--6311Chr02:2000573..2000597 (25 bp)
GATGACTAAATTCTGAGCTCTGAGG
LOC_Os02g04500
Os.54143.1.S1_at--773--8131Chr02:2000606..2000630 (25 bp)
GGACATCCATGCGTGAACTCATATA
LOC_Os02g04500
Os.54143.1.S1_at--700--2111Chr02:2000631..2000655 (25 bp)
ACATGTGAATGATCGCGCTTGCAGT
LOC_Os02g04500
Os.54143.1.S1_at--939--871Chr02:2000697..2000721 (25 bp)
ATGGCCATCCTGTTTCTGCAGTTAA
LOC_Os02g04500
Os.54143.1.S1_at--50--10511Chr02:2000754..2000778 (25 bp)
TTAATCTCACTATTTGCACCACCAT
LOC_Os02g04500
Os.54143.1.S1_at--247--3371Chr02:2000773..2000797 (25 bp)
CACCATTTTGTACCCCATTCATGTA
LOC_Os02g04500
Target Sequence 
GCATGCTTTGATTGCCTAGCAACAGATGGTCGCCTTGCAGTAATCTCATTCCACAGTTTGGAGGATAGAATAGTGAAGTA
GACCTTTCTGGAACTTATTCATGAAGATGAAATAGATGATGATGAAGACGACTTGGTGAGTGCTGACATTGATAGTGAAG
ATGAACCCTGGTTTAAGCAGAGAGTGCAAGGAAAGAATGGAACCATTCTAACGAAAAGACCAATATCTCGTTCACAAGAG
GAGGAAGAACTGAATCAGAGGTGCAGAAGTGCCAAGCTCAGAGTTATTCAGAAGGCGTGAACCTGGATTAATCATATGAT
GACTAAATTCTGAGCTCTGAGGAGCAGTGAGGACATCCATGCGTGAACTCATATAACATGTGAATGATCGCGCTTGCAGT
TGCAACAATAATAACTGGAAAAACTAGCTCGAGAGGATGAAATGGCCATCCTGTTTCTGCAGTTAACTTAGAGAGTAGAG
CTTAGGTAAGTCCAAAAATTAATCTCACTATTTGCACCACCATTTTGTACCCCATTCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis