Browse Element(s) Details


OsAffx.26812.1.S1_at

Description tigr:9630.m00346
TID=OsAffx.26812.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RWP-RK domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0434011/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04270Os.24718.1.S1_at10/112+1882715..1888951DNA polymerase V family protein, expressed
LOC_Os02g04280Os.47130.4.A1_x_at3/112+1889869..1890192retrotransposon protein, putative, unclassified
LOC_Os02g04290NANA2+1891132..1894155retrotransposon protein, putative, unclassified
LOC_Os02g04300NANA2+1894992..1897289retrotransposon protein, putative, unclassified
LOC_Os02g04310NANA2+1898854..1900969retrotransposon protein, putative, unclassified
LOC_Os02g04320Os.8830.1.S1_at11/112+1902990..1905136SEC13-related protein, putative, expressed
LOC_Os02g04330Os.22467.1.S1_at11/112+1909008..19128085'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os02g04340OsAffx.26812.1.S1_at11/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04340OsAffx.26812.2.S1_x_at6/112+1913425..1916183PB1 domain containing protein, expressed
LOC_Os02g04350Os.23706.1.A1_x_at1/112+1917163..1919044retrotransposon protein, putative, unclassified
LOC_Os02g04360OsAffx.26942.1.S1_x_at11/112+1921049..1921726hypothetical protein
LOC_Os02g04360OsAffx.26942.1.S1_at10/112+1921049..1921726hypothetical protein
LOC_Os02g04370NANA2+1928681..1929055hypothetical protein
LOC_Os02g04380NANA2+1930708..1933214hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_x_at11/112+1937125..1937611hypothetical protein
LOC_Os02g04390OsAffx.27691.1.S1_at11/112+1937125..1937611hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009877biological_processnodulation
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26812.1.S1_at--723--2891Chr02:1913995..1914019 (25 bp)
AAGGTGGCCATTTCGCAAGATCAGC
LOC_Os02g04340
OsAffx.26812.1.S1_at--102--411Chr02:1913976..1914000 (25 bp)
ATCAGCAAGGTGAACCGCTCCCTCG
LOC_Os02g04340
OsAffx.26812.1.S1_at--430--8991Chr02:1913945..1913969 (25 bp)
TGAAGCGCGTCATGGAATCCGTGAA
LOC_Os02g04340
OsAffx.26812.1.S1_at--633--4431Chr02:1913845..1913869 (25 bp)
GCCATGCCTGTCAAGTACCGTAGGA
LOC_Os02g04340
OsAffx.26812.1.S1_at--443--6931Chr02:1913826..1913850 (25 bp)
GTAGGAGAGACCTCCTCCCATGGAT
LOC_Os02g04340
OsAffx.26812.1.S1_at--298--2551Chr02:1913773..1913797 (25 bp)
AACTGCATTGCGAAAACCTCCGAGG
LOC_Os02g04340
OsAffx.26812.1.S1_at--1037--2611Chr02:1913759..1913783 (25 bp)
AACCTCCGAGGTGCGGCAATGGCGA
LOC_Os02g04340
OsAffx.26812.1.S1_at--753--9711Chr02:1913720..1913744 (25 bp)
TCAAGGCCAGCCACAGAGGTGACAT
LOC_Os02g04340
OsAffx.26812.1.S1_at--16--2151Chr02:1913708..1913732 (25 bp)
ACAGAGGTGACATCATCAGGTTCAG
LOC_Os02g04340
OsAffx.26812.1.S1_at--874--1871Chr02:1913582..1913606 (25 bp)
ACGAGTGGGTGCTTCTGTCCTGCGA
LOC_Os02g04340
OsAffx.26812.1.S1_at--931--3851Chr02:1913457..1913481 (25 bp)
CTGATGGTCCAGGAGGTAGCTGATA
LOC_Os02g04340
Target Sequence 
AAGGTGGCCATTTCGCAAGATCAGCAAGGTGAACCGCTCCCTCGACAAGATGAAGCGCGTCATGGAATCCGTGAACTGCT
CGCCGTCGCCGCCGGTGGCCATGCCTGCTCACCCAGCTCTTCTTCTCCCTCCGCCGCCGCCGCCACCGCGGCCATGCCTG
TCAAGTACCGTAGGAGAGACCTCCTCCCATGGATCATGCCAGGCGCCGCCATCTCACGCCAAAACTGCATTGCGAAAACC
TCCGAGGTGCGGCAATGGCGACGGCGTGGTCACCATCAAGGCCAGCCACAGAGGTGACATCATCAGGTTCAGGGTGCCGT
GCTCAGCCGGCGTCGCGGCGGTGAAGGCGGTGGTGGCCAAGCGGCTGAGCCTGGACGCCGGCGCCTTCGACGTCAAGTAC
CTGGACGACGACCACGAGTGGGTGCTTCTGTCCTGCGACGCCGACTTCCAGGAGTGCCTCGACGTCGTCCCGGCATTGCC
GTCGATGTCGGTGACGGCGAGGTCAGGCTCCGGAGCGGCGGCTCCGGTGGTCGTCAGGCTGATGGTCCAGGAGGTAGCTG
ATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis