Browse Element(s) Details


OsAffx.26812.2.S1_x_at

Description tigr:9633.m00900
TID=OsAffx.26812.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=T23E18.27
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1038011/11hypothetical protein
LOC_Os11g401106/11NIN-like protein 2, putative
LOC_Os02g043406/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10310Os.24864.1.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.3.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.2.S1_at9/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10320OsAffx.26810.1.S1_at11/115+5615175..5615447hypothetical protein
LOC_Os05g10330OsAffx.26811.1.S1_at10/115+5617833..5620429HAD superfamily phosphatase containing protein
LOC_Os05g10340NANA5+5623293..5626028transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10350OsAffx.4292.1.S1_at11/115+5628120..5628389hypothetical protein
LOC_Os05g10360OsAffx.14360.2.A1_at1/115+5629796..5630023hypothetical protein
LOC_Os05g10370Os.51184.1.S1_at11/115+5631984..5634088Acid phosphatase, putative, expressed
LOC_Os05g10380OsAffx.26812.2.S1_x_at11/115+5636801..5639210hypothetical protein
LOC_Os05g10390NANA5+5641108..5644389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10400NANA5+5645807..5648180transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.14491.2.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.47463.1.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10420OsAffx.14618.2.S1_at11/115+5657494..5657895hypothetical protein
LOC_Os05g10420OsAffx.14618.1.S1_x_at1/115+5657494..5657895hypothetical protein
LOC_Os05g10430OsAffx.14619.1.S1_at10/115+5659108..5659969hypothetical protein
LOC_Os05g10430OsAffx.14619.1.S1_x_at10/115+5659108..5659969hypothetical protein
LOC_Os05g10440Os.26886.6.S1_s_at7/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.26886.2.S1_s_at6/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.16467.1.S1_at4/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_x_at3/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_at2/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.20851.1.A1_x_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.14620.1.S1_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009877biological_processnodulation
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26812.2.S1_x_at--739--1093Chr11:23427489..23427513 (25 bp)
AGTGGACGCCCAACGTGCAGTGCTA
LOC_Os11g40110
OsAffx.26812.2.S1_x_at--1108--8253Chr11:23427463..23427487 (25 bp)
GGCAGCGGCGAGTACGCCCGCATTA
LOC_Os11g40110
OsAffx.26812.2.S1_x_at--230--152Chr05:5637437..5637461 (25 bp)
ATTAGCTACGCGCTCATCTACGACA
LOC_Os05g10380
OsAffx.26812.2.S1_x_at--69--453Chr11:23427427..23427451 (25 bp)
ATCTACGACATCCAGGGCAGCCTCT
LOC_Os11g40110
OsAffx.26812.2.S1_x_at--546--9331Chr05:5637358..5637382 (25 bp)
TCGCCGTGCATGAGCTCGTCAGCAC
LOC_Os05g10380
OsAffx.26812.2.S1_x_at--1132--1032Chr11:23427166..23427190 (25 bp)
AGGTGCAGGGATTACTCGCCGTGAA
LOC_Os11g40110
OsAffx.26812.2.S1_x_at--995--3792Chr11:23427152..23427176 (25 bp)
CTCGCCGTGAACCAGATAGTGAATC
LOC_Os11g40110
OsAffx.26812.2.S1_x_at--807--873Chr11:23427068..23427131 (25 bp)
ATGGCCGAGCTCACAAGCTGCCATT
LOC_Os11g40110
OsAffx.26812.2.S1_x_at--788--1591Chr05:5637046..5637070 (25 bp)
AGCTGCCATTGGCACGCAAACATGG
LOC_Os05g10380
OsAffx.26812.2.S1_x_at--854--8231Chr05:5637036..5637060 (25 bp)
GGCACGCAAACATGGGTGAGATGCA
LOC_Os05g10380
OsAffx.26812.2.S1_x_at--659--2592Chr05:5637000..5637024 (25 bp)
AACGACACGGAGAAGGCCGCGCTGA
LOC_Os05g10380
Target Sequence 
AGTGGACGCCCAACGTGCAGTGCTACGGCAGCGGCGAGTACGCCCGCATTAGCTACGCGCTCATCTACGACATCCAGGGC
AGCCTCTTCCTCCCTATCCTTGACCCCGACGACGCGAGCTCCCCCCTCGCCGTGCATGAGCTCGTCAGCACCGTGCTGCG
GCTCCGCGGCTCCGGAGAGGTGCAGGGATTACTCGCCGTGAACCAGATAGTGAATCCAGATGAGACCCGGGCGGCCATGG
CCGAGCTCACAAGCTGCCATTGGCACGCAAACATGGGTGAGATGCAGGAGCGGCGGAAACGACACGGAGAAGGCCGCGCT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26812.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis