Browse Element(s) Details


OsAffx.14618.2.S1_at

Description tigr:9633.m00905
TID=OsAffx.14618.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1042011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10370Os.51184.1.S1_at11/115+5631984..5634088Acid phosphatase, putative, expressed
LOC_Os05g10380OsAffx.26812.2.S1_x_at11/115+5636801..5639210hypothetical protein
LOC_Os05g10390NANA5+5641108..5644389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10400NANA5+5645807..5648180transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.14491.2.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.47463.1.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10420OsAffx.14618.2.S1_at11/115+5657494..5657895hypothetical protein
LOC_Os05g10420OsAffx.14618.1.S1_x_at1/115+5657494..5657895hypothetical protein
LOC_Os05g10430OsAffx.14619.1.S1_at10/115+5659108..5659969hypothetical protein
LOC_Os05g10430OsAffx.14619.1.S1_x_at10/115+5659108..5659969hypothetical protein
LOC_Os05g10440Os.26886.6.S1_s_at7/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.26886.2.S1_s_at6/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.16467.1.S1_at4/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_x_at3/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_at2/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.20851.1.A1_x_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.14620.1.S1_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10450NANA5+5669573..5670100hypothetical protein
LOC_Os05g10460Os.26886.1.S1_x_at4/115+5672145..5673819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10470Os.26886.3.S1_x_at3/115+5674006..5675342transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10480OsAffx.14620.1.S1_at11/115+5678178..5678783expressed protein
LOC_Os05g10480OsAffx.14618.1.S1_x_at1/115+5678178..5678783expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14618.2.S1_at--608--7971Chr05:5657840..5657864 (25 bp)
GGATCCTCGCCGAGTCCAACGAGAC
LOC_Os05g10420
OsAffx.14618.2.S1_at--232--9331Chr05:5657834..5657858 (25 bp)
TCGCCGAGTCCAACGAGACCGTCTG
LOC_Os05g10420
OsAffx.14618.2.S1_at--106--1391Chr05:5657819..5657843 (25 bp)
AGACCGTCTGCACCGTGTACCGGGA
LOC_Os05g10420
OsAffx.14618.2.S1_at--838--3251Chr05:5657710..5657734 (25 bp)
CAACGCCTACGAGGATGATGCCAAG
LOC_Os05g10420
OsAffx.14618.2.S1_at--384--4071Chr05:5657701..5657725 (25 bp)
CGAGGATGATGCCAAGTTCGCCAAG
LOC_Os05g10420
OsAffx.14618.2.S1_at--264--9231Chr05:5657675..5657699 (25 bp)
TCCAGGCTTGGGTCTGCGACGAGTA
LOC_Os05g10420
OsAffx.14618.2.S1_at--719--8631Chr05:5657667..5657691 (25 bp)
TGGGTCTGCGACGAGTACGCTCGAA
LOC_Os05g10420
OsAffx.14618.2.S1_at--719--7171Chr05:5657664..5657688 (25 bp)
GTCTGCGACGAGTACGCTCGAAAAG
LOC_Os05g10420
OsAffx.14618.2.S1_at--297--3431Chr05:5657600..5657624 (25 bp)
CAGAGGTGTTCAGGCTCTACGATGA
LOC_Os05g10420
OsAffx.14618.2.S1_at--292--7431Chr05:5657595..5657619 (25 bp)
GTGTTCAGGCTCTACGATGAAGCAC
LOC_Os05g10420
OsAffx.14618.2.S1_at--845--3471Chr05:5657590..5657614 (25 bp)
CAGGCTCTACGATGAAGCACGGGAG
LOC_Os05g10420
Target Sequence 
GGATCCTCGCCGAGTCCAACGAGACCGTCTGCACCGTGTACCGGGAGCTGAAGCGCGCCAACCCGTCGCTGGTGCCCTCG
CCGGAGGAGGAGAAGGACGAGTCCACCATGCTCCTCTACACCTGCGCCCGCAACGCCTACGAGGATGATGCCAAGTTCGC
CAAGTTCCAGGCTTGGGTCTGCGACGAGTACGCTCGAAAAGGATTCGTGGAGGTGGACTACGACTACTTCGGTGAGAGGG
CAGAGGTGTTCAGGCTCTACGATGAAGCACGGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14618.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis