Browse Element(s) Details


Os.51184.1.S1_at

Description gb:AK061404.1
DB_XREF= gi:32971422
TID=Os.51184.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A01, full insert sequence.
FL= gb:AK061404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1037011/11Acid phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10310Os.24864.1.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.3.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.2.S1_at9/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10320OsAffx.26810.1.S1_at11/115+5615175..5615447hypothetical protein
LOC_Os05g10330OsAffx.26811.1.S1_at10/115+5617833..5620429HAD superfamily phosphatase containing protein
LOC_Os05g10340NANA5+5623293..5626028transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10350OsAffx.4292.1.S1_at11/115+5628120..5628389hypothetical protein
LOC_Os05g10360OsAffx.14360.2.A1_at1/115+5629796..5630023hypothetical protein
LOC_Os05g10370Os.51184.1.S1_at11/115+5631984..5634088Acid phosphatase, putative, expressed
LOC_Os05g10380OsAffx.26812.2.S1_x_at11/115+5636801..5639210hypothetical protein
LOC_Os05g10390NANA5+5641108..5644389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10400NANA5+5645807..5648180transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.14491.2.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.47463.1.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10420OsAffx.14618.2.S1_at11/115+5657494..5657895hypothetical protein
LOC_Os05g10420OsAffx.14618.1.S1_x_at1/115+5657494..5657895hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51184.1.S1_at--533--6111Chr05:5632265..5632289 (25 bp)
GAGTGACATCCTCGGTACACCGGAG
LOC_Os05g10370
Os.51184.1.S1_at--682--9891Chr05:5632207..5632231 (25 bp)
TACTACATCGGCTAGGTTGCTGAGT
LOC_Os05g10370
Os.51184.1.S1_at--517--7911Chr05:5632193..5632217 (25 bp)
GGTTGCTGAGTAACAAGTCCAATGA
LOC_Os05g10370
Os.51184.1.S1_at--503--2991Chr05:5632173..5632197 (25 bp)
AATGAGGCCCAGACTCCGTGTCACG
LOC_Os05g10370
Os.51184.1.S1_at--544--1891Chr05:5632151..5632175 (25 bp)
ACGTGCGTTTCATCTTTGTTTTGTC
LOC_Os05g10370
Os.51184.1.S1_at--1129--6731Chr05:5632111..5632135 (25 bp)
GTTACAATAATTTTCGACGCGCGTC
LOC_Os05g10370
Os.51184.1.S1_at--740--7151Chr05:5632089..5632113 (25 bp)
GTCTATCTGTACTTTTCCTTGTGAG
LOC_Os05g10370
Os.51184.1.S1_at--598--10011Chr05:5632047..5632071 (25 bp)
TAGCATGTACGTGTAAGAGCGGTAA
LOC_Os05g10370
Os.51184.1.S1_at--391--5891Chr05:5632031..5632055 (25 bp)
GAGCGGTAAATCTATCTAGCTATGT
LOC_Os05g10370
Os.51184.1.S1_at--732--7011Chr05:5632008..5632032 (25 bp)
GTACTATTGAGCAAGCTTGTCGCGT
LOC_Os05g10370
Os.51184.1.S1_at--929--7231Chr05:5631990..5632014 (25 bp)
GTCGCGTGCGTATCTTTGTCTAATA
LOC_Os05g10370
Target Sequence 
GAGTGACATCCTCGGTACACCGGAGGGCGCCCGCACCTTCAAGCTGCCGGACCCCATGTACTACATCGGCTAGGTTGCTG
AGTAACAAGTCCAATGAGGCCCAGACTCCGTGTCACGTGCGTTTCATCTTTGTTTTGTCTTGAAATGCTTCTAAGTTACA
ATAATTTTCGACGCGCGTCTATCTGTACTTTTCCTTGTGAGATTGATGAGATTTGTAATAGCATGTACGTGTAAGAGCGG
TAAATCTATCTAGCTATGTACTATTGAGCAAGCTTGTCGCGTGCGTATCTTTGTCTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis