Browse Element(s) Details


OsAffx.4292.1.S1_at

Description tigr:9633.m00898
TID=OsAffx.4292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1035011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10300NANA5+5602517..5603188hypothetical protein
LOC_Os05g10310Os.24864.1.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.3.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.2.S1_at9/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10320OsAffx.26810.1.S1_at11/115+5615175..5615447hypothetical protein
LOC_Os05g10330OsAffx.26811.1.S1_at10/115+5617833..5620429HAD superfamily phosphatase containing protein
LOC_Os05g10340NANA5+5623293..5626028transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10350OsAffx.4292.1.S1_at11/115+5628120..5628389hypothetical protein
LOC_Os05g10360OsAffx.14360.2.A1_at1/115+5629796..5630023hypothetical protein
LOC_Os05g10370Os.51184.1.S1_at11/115+5631984..5634088Acid phosphatase, putative, expressed
LOC_Os05g10380OsAffx.26812.2.S1_x_at11/115+5636801..5639210hypothetical protein
LOC_Os05g10390NANA5+5641108..5644389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10400NANA5+5645807..5648180transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.14491.2.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.47463.1.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4292.1.S1_at--929--2491Chr05:5628307..5628331 (25 bp)
AACAGTGGATGCACCATGCGTGGGC
LOC_Os05g10350
OsAffx.4292.1.S1_at--1144--1091Chr05:5628304..5628328 (25 bp)
AGTGGATGCACCATGCGTGGGCTCT
LOC_Os05g10350
OsAffx.4292.1.S1_at--665--651Chr05:5628299..5628323 (25 bp)
ATGCACCATGCGTGGGCTCTGGCGC
LOC_Os05g10350
OsAffx.4292.1.S1_at--151--10591Chr05:5628238..5628262 (25 bp)
TTCTCCTCTTCCACTTTCTAGCGGA
LOC_Os05g10350
OsAffx.4292.1.S1_at--289--3751Chr05:5628233..5628257 (25 bp)
CTCTTCCACTTTCTAGCGGAGGCAA
LOC_Os05g10350
OsAffx.4292.1.S1_at--696--10651Chr05:5628230..5628254 (25 bp)
TTCCACTTTCTAGCGGAGGCAACTG
LOC_Os05g10350
OsAffx.4292.1.S1_at--622--2031Chr05:5628226..5628250 (25 bp)
ACTTTCTAGCGGAGGCAACTGCTTT
LOC_Os05g10350
OsAffx.4292.1.S1_at--748--6231Chr05:5628200..5628224 (25 bp)
GATGGCGTGGCTAGAGACGATAACA
LOC_Os05g10350
OsAffx.4292.1.S1_at--423--7531Chr05:5628194..5628218 (25 bp)
GTGGCTAGAGACGATAACAATACCT
LOC_Os05g10350
OsAffx.4292.1.S1_at--517--5771Chr05:5628185..5628209 (25 bp)
GACGATAACAATACCTCAGACCTCA
LOC_Os05g10350
OsAffx.4292.1.S1_at--218--9831Chr05:5628180..5628204 (25 bp)
TAACAATACCTCAGACCTCAATGGG
LOC_Os05g10350
Target Sequence 
AACAGTGGATGCACCATGCGTGGGCTCTGGCGCCGCCACTCGTCCTCCCTCCAGCACCTTCGTCTCCTCTTCTCCTCTTC
CACTTTCTAGCGGAGGCAACTGCTTTGGATGGCGTGGCTAGAGACGATAACAATACCTCAGACCTCAATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis