Browse Element(s) Details


OsAffx.26811.1.S1_at

Description tigr:9633.m00896
TID=OsAffx.26811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acid phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1033010/11HAD superfamily phosphatase containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10280OsAffx.30941.5.S1_x_at11/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.9.S1_x_at7/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.1.S1_x_at5/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.2.S1_x_at5/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10290OsAffx.26809.1.S1_at11/115+5600025..5600425hypothetical protein
LOC_Os05g10300NANA5+5602517..5603188hypothetical protein
LOC_Os05g10310Os.24864.1.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.3.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.2.S1_at9/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10320OsAffx.26810.1.S1_at11/115+5615175..5615447hypothetical protein
LOC_Os05g10330OsAffx.26811.1.S1_at10/115+5617833..5620429HAD superfamily phosphatase containing protein
LOC_Os05g10340NANA5+5623293..5626028transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10350OsAffx.4292.1.S1_at11/115+5628120..5628389hypothetical protein
LOC_Os05g10360OsAffx.14360.2.A1_at1/115+5629796..5630023hypothetical protein
LOC_Os05g10370Os.51184.1.S1_at11/115+5631984..5634088Acid phosphatase, putative, expressed
LOC_Os05g10380OsAffx.26812.2.S1_x_at11/115+5636801..5639210hypothetical protein
LOC_Os05g10390NANA5+5641108..5644389transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0003993molecular_functionacid phosphatase activity
GO:0008134molecular_functiontranscription factor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26811.1.S1_at--335--3951NONE
CGGATTCGGAACTACACTGTACGAC
NONE
OsAffx.26811.1.S1_at--740--5471Chr05:5618708..5618732 (25 bp)
GAACTACACTGTACGACGACACATG
LOC_Os05g10330
OsAffx.26811.1.S1_at--200--3871Chr05:5618700..5618724 (25 bp)
CTGTACGACGACACATGCTTCCGTG
LOC_Os05g10330
OsAffx.26811.1.S1_at--256--2671Chr05:5618598..5618622 (25 bp)
AAGCCGGTGTTCTTGACAAGCCGCA
LOC_Os05g10330
OsAffx.26811.1.S1_at--865--8771Chr05:5618591..5618615 (25 bp)
TGTTCTTGACAAGCCGCACCGAGGA
LOC_Os05g10330
OsAffx.26811.1.S1_at--139--5891Chr05:5618046..5618404 (25 bp)
GAGCGACATCCTCGTTTATGATTCG
LOC_Os05g10330
OsAffx.26811.1.S1_at--1112--3531Chr05:5618040..5618398 (25 bp)
CATCCTCGTTTATGATTCGCCTATA
LOC_Os05g10330
OsAffx.26811.1.S1_at--1001--711Chr05:5618029..5618053 (25 bp)
ATGATTCGCCTATATACATAAGACG
LOC_Os05g10330
OsAffx.26811.1.S1_at--777--351Chr05:5618012..5618036 (25 bp)
ATAAGACGATTTAAGCCAGCAGTGC
LOC_Os05g10330
OsAffx.26811.1.S1_at--514--2531Chr05:5617975..5617999 (25 bp)
AACTCCTAGGGTCTGTCGTTGCATT
LOC_Os05g10330
OsAffx.26811.1.S1_at--173--1072Chr05:5617968..5617992 (25 bp)
AGGGTCTGTCGTTGCATTCAAGTCC
LOC_Os05g10330
Target Sequence 
CGGATTCGGAACTACACTGTACGACGACACATGCTTCCGTGAATACGTGGTGGAGGGGAGCGGGCTGGCGCTGCCGGAGA
CGAGGCGGTTGTACCGGCGGCTGCTCCAGCTCGGCGTCAAGCCGGTGTTCTTGACAAGCCGCACCGAGGACGAAAGGAAC
ATCACCGTCACAAACCTTCGCCGGCAGGGATACTCCGGGTGGATGAAGCTGTTGCTCAAGCCAGCAGTGCACACCGCCGG
CGAACTCCTGGGGTCTGTCGTTGCATTCAAGTCCGGCGAGCGGCAGAAGCTGGAGGATGCCGGTTTCACCATTGTCGGTA
ACATCGGTGACCAGTGGAGCGACATCCTCGTTTATGATTCGCCTATATACATAAGACGATTTAAGCCAGCAGTGCACACC
GCCGGCGAACTCCTAGGGTCTGTCGTTGCATTCAAGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis