Browse Element(s) Details


OsAffx.30941.2.S1_x_at

Description tigr:9639.m01196
TID=OsAffx.30941.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serpin (serine protease inhibitor), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1249011/11transposon protein, putative, unclassified
LOC_Os06g369709/11transposon protein, putative, unclassified
LOC_Os09g084607/11transposon protein, putative, unclassified
LOC_Os07g130205/11SWIM zinc finger family protein
LOC_Os05g102805/11transposon protein, putative, unclassified, expressed
LOC_Os09g255105/11transposon protein, putative, unclassified
LOC_Os12g244003/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12450Os.10827.1.S1_x_at10/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.46055.2.S1_x_at5/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12460OsAffx.18815.1.S1_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12460OsAffx.18815.1.S1_x_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12470Os.55418.1.S1_at11/1111+6964096..6966445expressed protein
LOC_Os11g12480Os.50567.1.S1_at11/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12480OsAffx.12394.1.S1_at1/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12490OsAffx.30941.2.S1_x_at11/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.1.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.9.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.5.S1_x_at7/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12500OsAffx.29755.4.S1_x_at11/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_at10/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_x_at8/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.3.S1_x_at4/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500Os.44324.1.A1_at3/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12510OsAffx.29755.5.S1_x_at11/1111+6986475..6990310hypothetical protein
LOC_Os11g12510OsAffx.29755.1.S1_s_at7/1111+6986475..6990310hypothetical protein
LOC_Os11g12520NANA11+7001255..7002696Serpin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30941.2.S1_x_at--365--4852Chr11:6980789..6980813 (25 bp)
GCTACTGTTCTTGAAAGCAACCCTT
LOC_Os11g12490
OsAffx.30941.2.S1_x_at--842--5536Chr11:6980801..6980825 (25 bp)
GAAAGCAACCCTTTACTCAGGTTCA
LOC_Os11g12490
OsAffx.30941.2.S1_x_at--156--3757Chr12:13917645..13917669 (25 bp)
CTCAGGTTCAACATCTTGTCACAGA
LOC_Os12g24400
OsAffx.30941.2.S1_x_at--39--9932Chr12:13917773..13917797 (25 bp)
TACGGCTCCTAACGAGGCTACTGTT
LOC_Os12g24400
OsAffx.30941.2.S1_x_at--964--3514Chr12:13917798..13917819 (22 bp)
CATGTTCAGGATGCGGCGGCGACAA
LOC_Os12g24400
OsAffx.30941.2.S1_x_at--682--4095Chr12:13920643..13920667 (25 bp)
CGACAACTTGTGGTGTAGCTTCTGT
NONE
OsAffx.30941.2.S1_x_at--855--8616Chr12:13920653..13920677 (25 bp)
TGGTGTAGCTTCTGTTGGTGCTCAA
NONE
OsAffx.30941.2.S1_x_at--904--7257Chr12:13920694..13920718 (25 bp)
GTCCTAGTGGTGTTGGTATTGATGC
NONE
OsAffx.30941.2.S1_x_at--98--837Chr12:13920762..13920786 (25 bp)
ATGGTTGGAATTGCTTCTACTTCTG
NONE
OsAffx.30941.2.S1_x_at--615--7951Chr11:6981245..6981269 (25 bp)
GGATCACATGACCATAACATTCGCA
LOC_Os11g12490
OsAffx.30941.2.S1_x_at--111--353Chr12:13920913..13920937 (25 bp)
ATAACATTCGCACTTGTCCCAAAAA
NONE
Target Sequence 
GCTACTGTTCTTGAAAGCAACCCTTTACTCAGGTTCAACATCTTGTCACAGAAAATGATTAAGTTAGCTTCAGATGCATC
AAAAACAAAAGAAAAGTTTATATATGTGATGAATGAAAGTGACAAGATTGAAGATGGGTTGAAGGCAATGAGTGATACGG
CTCCTAACGAGGCTACTGTTCATGTTCAGGATGCGGCGGCGACAACTTGTGGTGTAGCTTCTGTTGGTGCTCAAACTGGT
ACATTGATGGGTCCTAGTGGTGTTGGTATTGATGCTGAGAGCACAAAGGGTGCGGTTGCTGAAATTGAAACAACAGATAT
GGTTGGAATTGCTTCTACTTCTGNTTTACTGGATCCAAAATGCTCTAATAGCAAAGGCAGGCACAAGAGTGAGCCAAGAA
AAAAGAGGCTGATAAATGTGATTAGAAGCAAGGGTTTGGTGACATGTAGTGGTTGTGGATCACATGACCATAACATTCGC
ACTTGTCCCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30941.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis