Browse Element(s) Details


OsAffx.18815.1.S1_at

Description tigr:9639.m01189
TID=OsAffx.18815.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Serpin (serine protease inhibitor), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1246011/11Serpin family protein
LOC_Os11g1242011/11Serpin family protein
LOC_Os11g1241011/11Serpin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12420OsAffx.18815.1.S1_x_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12420OsAffx.18815.1.S1_at11/1111+6935672..6937468Serpin family protein
LOC_Os11g12430OsAffx.18817.1.S1_at11/1111+6938707..6942622hypothetical protein
LOC_Os11g12440OsAffx.25936.7.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.1.S1_s_at11/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.2.S1_x_at3/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12440OsAffx.25936.5.S1_x_at2/1111+6945550..6948589transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.10827.1.S1_x_at10/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12450Os.46055.2.S1_x_at5/1111+6951588..6955226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g12460OsAffx.18815.1.S1_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12460OsAffx.18815.1.S1_x_at11/1111+6958710..6960024Serpin family protein
LOC_Os11g12470Os.55418.1.S1_at11/1111+6964096..6966445expressed protein
LOC_Os11g12480Os.50567.1.S1_at11/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12480OsAffx.12394.1.S1_at1/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12490OsAffx.30941.2.S1_x_at11/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.1.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.9.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.5.S1_x_at7/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12500OsAffx.29755.4.S1_x_at11/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_at10/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_x_at8/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.3.S1_x_at4/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500Os.44324.1.A1_at3/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18815.1.S1_at--823--1033Chr11:6959639..6959663 (25 bp)
AGGTCGGCGAGTTCAGGATCCCCAG
LOC_Os11g12460
OsAffx.18815.1.S1_at--1109--7173Chr11:6959641..6959665 (25 bp)
GTCGGCGAGTTCAGGATCCCCAGGT
LOC_Os11g12460
OsAffx.18815.1.S1_at--270--9453Chr11:6959642..6959666 (25 bp)
TCGGCGAGTTCAGGATCCCCAGGTT
LOC_Os11g12460
OsAffx.18815.1.S1_at--966--3913Chr11:6959643..6959667 (25 bp)
CGGCGAGTTCAGGATCCCCAGGTTC
LOC_Os11g12460
OsAffx.18815.1.S1_at--704--8353Chr11:6959644..6959668 (25 bp)
GGCGAGTTCAGGATCCCCAGGTTCA
LOC_Os11g12460
OsAffx.18815.1.S1_at--1118--4613Chr11:6959645..6959669 (25 bp)
GCGAGTTCAGGATCCCCAGGTTCAA
LOC_Os11g12460
OsAffx.18815.1.S1_at--721--4073Chr11:6959646..6959670 (25 bp)
CGAGTTCAGGATCCCCAGGTTCAAG
LOC_Os11g12460
OsAffx.18815.1.S1_at--1114--6733Chr11:6959649..6959673 (25 bp)
GTTCAGGATCCCCAGGTTCAAGCTC
LOC_Os11g12460
OsAffx.18815.1.S1_at--714--10533Chr11:6959650..6959674 (25 bp)
TTCAGGATCCCCAGGTTCAAGCTCT
LOC_Os11g12460
OsAffx.18815.1.S1_at--231--993Chr11:6959653..6959677 (25 bp)
AGGATCCCCAGGTTCAAGCTCTCCT
LOC_Os11g12460
OsAffx.18815.1.S1_at--620--7973Chr11:6959654..6959678 (25 bp)
GGATCCCCAGGTTCAAGCTCTCCTT
LOC_Os11g12460
Target Sequence 
AGGTCGGCGAGTTCAGGATCCCCAGGTTCAAGCTCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis