Browse Element(s) Details

OsAffx.29755.2.S1_at

Description

tigr:9634.m03516
TID=OsAffx.29755.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g36960	11/11	hypothetical protein
LOC_Os11g12500	10/11	Ulp1 protease family, C-terminal catalytic domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g36910	OsAffx.15786.1.S1_at	11/11	6	+	21749359..21751422	Rf1 protein, mitochondrial precursor, putative
LOC_Os06g36920	OsAffx.5033.1.S1_at	11/11	6	+	21754621..21757567	thromboxane-A synthase, putative, expressed
LOC_Os06g36920	OsAffx.5032.1.S1_at	7/11	6	+	21754621..21757567	thromboxane-A synthase, putative, expressed
LOC_Os06g36930	OsAffx.27969.1.S1_x_at	11/11	6	+	21760307..21761424	HSF-type DNA-binding domain containing protein
LOC_Os06g36940	OsAffx.15787.3.S1_at	10/11	6	+	21762419..21764047	expressed protein
LOC_Os06g36950	Os.20602.2.S1_x_at	11/11	6	+	21764817..21767012	hAT family dimerisation domain containing protein
LOC_Os06g36960	OsAffx.29755.2.S1_x_at	11/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.2.S1_at	11/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.4.S1_x_at	9/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.5.S1_x_at	9/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.1.S1_s_at	6/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36960	OsAffx.29755.3.S1_x_at	4/11	6	+	21771555..21778666	hypothetical protein
LOC_Os06g36970	OsAffx.30941.2.S1_x_at	9/11	6	+	21779781..21783748	transposon protein, putative, unclassified
LOC_Os06g36970	OsAffx.30941.9.S1_x_at	8/11	6	+	21779781..21783748	transposon protein, putative, unclassified
LOC_Os06g36970	OsAffx.30941.5.S1_x_at	7/11	6	+	21779781..21783748	transposon protein, putative, unclassified
LOC_Os06g36970	OsAffx.30941.1.S1_x_at	4/11	6	+	21779781..21783748	transposon protein, putative, unclassified
LOC_Os06g36980	Os.40855.2.S1_x_at	8/11	6	+	21790345..21791787	hypothetical protein
LOC_Os06g36980	Os.40855.4.S1_x_at	3/11	6	+	21790345..21791787	hypothetical protein
LOC_Os06g36980	Os.40360.1.S1_x_at	1/11	6	+	21790345..21791787	hypothetical protein
LOC_Os06g36980	Os.40855.4.S1_at	1/11	6	+	21790345..21791787	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.29755.2.S1_at--223--1017	2	Chr06:21778590..21778614 (25 bp)	TATCAACCCAACAATCATCCGCAAA	LOC_Os06g36960
OsAffx.29755.2.S1_at--840--37	2	Chr06:21778591..21778615 (25 bp)	ATCAACCCAACAATCATCCGCAAAT	LOC_Os06g36960
OsAffx.29755.2.S1_at--348--971	2	Chr06:21778592..21778616 (25 bp)	TCAACCCAACAATCATCCGCAAATT	LOC_Os06g36960
OsAffx.29755.2.S1_at--910--323	2	Chr06:21778593..21778617 (25 bp)	CAACCCAACAATCATCCGCAAATTA	LOC_Os06g36960
OsAffx.29755.2.S1_at--1011--259	1	Chr06:21778594..21778618 (25 bp)	AACCCAACAATCATCCGCAAATTAC	LOC_Os06g36960
OsAffx.29755.2.S1_at--70--181	2	Chr06:21778595..21778619 (25 bp)	ACCCAACAATCATCCGCAAATTACA	LOC_Os06g36960
OsAffx.29755.2.S1_at--110--417	2	Chr06:21778596..21778620 (25 bp)	CCCAACAATCATCCGCAAATTACAT	LOC_Os06g36960
OsAffx.29755.2.S1_at--548--245	2	Chr06:21778599..21778623 (25 bp)	AACAATCATCCGCAAATTACATATC	LOC_Os06g36960
OsAffx.29755.2.S1_at--701--307	2	Chr06:21778602..21778626 (25 bp)	AATCATCCGCAAATTACATATCATT	LOC_Os06g36960
OsAffx.29755.2.S1_at--722--961	2	Chr06:21778604..21778628 (25 bp)	TCATCCGCAAATTACATATCATTTT	LOC_Os06g36960
OsAffx.29755.2.S1_at--411--419	2	Chr06:21778608..21778632 (25 bp)	CCGCAAATTACATATCATTTTCTTT	LOC_Os06g36960

Target Sequence

TATCAACCCAACAATCATCCGCAAATTACATATCATTTTCTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis