Browse Element(s) Details


OsAffx.29755.4.S1_x_at

Description tigr:9640.m02325
TID=OsAffx.29755.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2441011/11hypothetical protein
LOC_Os11g1250011/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os06g369609/11hypothetical protein
LOC_Os09g084506/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g255205/11hypothetical protein
LOC_Os05g102705/11hypothetical protein
LOC_Os07g130105/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24380OsAffx.31863.1.S1_at11/1112+13902675..13903589hypothetical protein
LOC_Os12g24390OsAffx.31864.1.S1_at11/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24390Os.9218.1.S1_at10/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24400OsAffx.30941.5.S1_x_at8/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.1.S1_x_at7/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.9.S1_x_at4/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.2.S1_x_at3/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24410OsAffx.29755.4.S1_x_at11/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.2.S1_x_at8/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.5.S1_x_at6/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.1.S1_s_at5/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.3.S1_x_at2/1112+13922141..13929900hypothetical protein
LOC_Os12g24420OsAffx.31860.1.S1_at11/1112+13933879..13935553Protein kinase domain containing protein
LOC_Os12g24430NANA12+13936133..13939099retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24450Os.26894.1.A1_x_at2/1112+13947486..13953616retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24450OsAffx.15069.1.S1_at1/1112+13947486..13953616retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29755.4.S1_x_at--274--6213Chr06:21775922..21775946 (25 bp)
GAGGCTTGAGGGACAACACTGTGAT
LOC_Os06g36960
OsAffx.29755.4.S1_x_at--740--1874Chr09:4407698..4407722 (25 bp)
ACGAGTACCAAGATGACTTTGCAGA
LOC_Os09g08450
OsAffx.29755.4.S1_x_at--876--6635Chr09:4407763..4408255 (25 bp)
GTTGAACAACGTGCGCAACCACAAA
LOC_Os09g08450
OsAffx.29755.4.S1_x_at--324--3757Chr09:4408277..4408301 (25 bp)
CTCAAACACCACTGCACATAAACAT
LOC_Os09g08450
OsAffx.29755.4.S1_x_at--357--74Chr09:4408300..4408324 (25 bp)
ATTGCTTCTGCAAGGACACCTGCTA
LOC_Os09g08450
OsAffx.29755.4.S1_x_at--774--5613Chr06:21778076..21778100 (25 bp)
GACAAGCTTTTACATTTGCCAGGAA
LOC_Os06g36960
OsAffx.29755.4.S1_x_at--787--5556Chr07:7466276..7466300 (25 bp)
GAAACCTCTGCACTACTATGACTTG
LOC_Os07g13010
OsAffx.29755.4.S1_x_at--152--2073Chr06:21778195..21778215 (21 bp)
ACTTGCTTATTTTCCCATGTCTGTA
LOC_Os06g36960
OsAffx.29755.4.S1_x_at--557--9597Chr09:4409757..4409781 (25 bp)
TCATTGGTTTGTGTTTACTGTGGAC
LOC_Os09g08450
OsAffx.29755.4.S1_x_at--652--7593Chr06:21778253..21778277 (25 bp)
GGGCATCACTTTATCTTCCTGGACT
LOC_Os06g36960
OsAffx.29755.4.S1_x_at--282--437Chr09:4409801..4409824 (24 bp)
ATCTTCCTGGACTCCATTTATGATG
LOC_Os09g08450
Target Sequence 
GAGGCTTGAGGGACAACACTGTGATGAAAACGAGTACCAAGATGACTTTGCAGAATTCTTATATGAAGAGGAACCATCAG
ATAACATCGATATGGTTGAACAACGTGCGCAACCACAAATAAACAATGAGCAAAGTAGCCCTCAAACACCACTGCACATA
AACATTGCTTCTGCAAGGACACCTGCTACAAAACAAGTAATGCAAATTGTTTATTTCTTGAAGAATTGGGAAGGTGCTGG
AAAAGAGGAAGACTATGAAAATTGCGCAAGACAAGCTTTTACATTTGCCAGGAACAAGAAACCTCTGCACTACTATGACT
TGCTTATTTTCCCATGTCTGTATGACAATCATTGGTTTGTGTTTACTGTGGACATCAAGGGGCATCACTTTATCTTCCTG
GACTCCATTTATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29755.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis