Browse Element(s) Details


Os.9218.1.S1_at

Description gb:BX900645
DB_XREF= gi:40493195
DB_XREF=BX900645
CLONE=y734e12p3
TID=Os.9218.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9218 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2439010/11von Willebrand factor type A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24340OsAffx.31862.1.S1_at11/1112+13888337..13889009hypothetical protein
LOC_Os12g24350OsAffx.19799.1.S1_at11/1112+13889667..13890262hypothetical protein
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24380OsAffx.31863.1.S1_at11/1112+13902675..13903589hypothetical protein
LOC_Os12g24390OsAffx.31864.1.S1_at11/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24390Os.9218.1.S1_at10/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24400OsAffx.30941.5.S1_x_at8/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.1.S1_x_at7/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.9.S1_x_at4/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.2.S1_x_at3/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24410OsAffx.29755.4.S1_x_at11/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.2.S1_x_at8/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.5.S1_x_at6/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.1.S1_s_at5/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.3.S1_x_at2/1112+13922141..13929900hypothetical protein
LOC_Os12g24420OsAffx.31860.1.S1_at11/1112+13933879..13935553Protein kinase domain containing protein
LOC_Os12g24430NANA12+13936133..13939099retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9218.1.S1_at--441--1171NONE
AGTAATACAGGGAGACGCAGGCGCT
NONE
Os.9218.1.S1_at--751--10351Chr12:13913073..13913097 (25 bp)
TTATATATTGCCTTGCCCGTCCAAT
LOC_Os12g24390
Os.9218.1.S1_at--22--10691Chr12:13913085..13913109 (25 bp)
TTGCCCGTCCAATTCGAATTTACTA
LOC_Os12g24390
Os.9218.1.S1_at--1021--9332Chr12:13913098..13913122 (25 bp)
TCGAATTTACTATCCCAGTCCCAGA
LOC_Os12g24390
Os.9218.1.S1_at--6--7251Chr12:13913115..13913139 (25 bp)
GTCCCAGACGCGCATGTGCTAAGTT
LOC_Os12g24390
Os.9218.1.S1_at--59--4851Chr12:13913132..13913156 (25 bp)
GCTAAGTTACGTTGTTCTTCATCTC
LOC_Os12g24390
Os.9218.1.S1_at--574--9611Chr12:13913150..13913174 (25 bp)
TCATCTCTTTCAATTTCCTTTCTCG
LOC_Os12g24390
Os.9218.1.S1_at--910--10311Chr12:13913168..13913192 (25 bp)
TTTCTCGCTTCTGATCATACTACTT
LOC_Os12g24390
Os.9218.1.S1_at--956--8731Chr12:13913200..13913224 (25 bp)
TGTAACCGATCCAATAAGTGCGCCG
LOC_Os12g24390
Os.9218.1.S1_at--975--4471Chr12:13913221..13913245 (25 bp)
GCCGGCCCCTAAGATGTAATCAATC
LOC_Os12g24390
Os.9218.1.S1_at--961--651Chr12:13913269..13913293 (25 bp)
ATGCAAGACCCTTTTTAGAGCAACT
LOC_Os12g24390
Target Sequence 
AGTAATACAGGGAGACGCAGGCGCTCTACGACAAGCTGGCCGACCCTTACGCGCTCGCCACCATCATCTCCCATCGCCGC
CAGCGCGCCGCTGGAAGGGNCGACGAGGAGGTCATCTCCCTCTACGTCACGCCGCGCATGATCGCCTACCTCGCTCAGGC
CAAGAAGTTCGAGGAGAACCCGGAAGCGCCGGTGCCCAGCGCTGACGAGGATGTCAAGCAGGAGATGGCTGCCAACCCAC
TCGCCGCTATCTCCGCCCCGCTCGGCTTCTACCTGGAGAACGCCATCAAGGCACTGNAGGCCATCCAGAAGATCATCGCC
GCCAACACAATTTGATATTATATATTGCCTTGCCCGTCCAATTCGAATTTACTATCCCAGTCCCAGACGCGCATGTGCTA
AGTTACGTTGTTCTTCATCTCTTTCAATTTCCTTTCTCGCTTCTGATCATACTACTTATATGTATGTAACCGATCCAATA
AGTGCGCCGGCCCCTAAGATGTAATCAATCTATATATGTACCANTGTAATGTAATGCAAGACCCTTTTTAGAGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis