Browse Element(s) Details


OsAffx.31864.1.S1_at

Description tigr:9640.m02323
TID=OsAffx.31864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=von Willebrand factor type A domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2439011/11von Willebrand factor type A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24340OsAffx.31862.1.S1_at11/1112+13888337..13889009hypothetical protein
LOC_Os12g24350OsAffx.19799.1.S1_at11/1112+13889667..13890262hypothetical protein
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24380OsAffx.31863.1.S1_at11/1112+13902675..13903589hypothetical protein
LOC_Os12g24390OsAffx.31864.1.S1_at11/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24390Os.9218.1.S1_at10/1112+13911270..13913324von Willebrand factor type A domain containing protein, expressed
LOC_Os12g24400OsAffx.30941.5.S1_x_at8/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.1.S1_x_at7/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.9.S1_x_at4/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24400OsAffx.30941.2.S1_x_at3/1112+13914749..13917908transposon protein, putative, unclassified
LOC_Os12g24410OsAffx.29755.4.S1_x_at11/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.2.S1_x_at8/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.5.S1_x_at6/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.1.S1_s_at5/1112+13922141..13929900hypothetical protein
LOC_Os12g24410OsAffx.29755.3.S1_x_at2/1112+13922141..13929900hypothetical protein
LOC_Os12g24420OsAffx.31860.1.S1_at11/1112+13933879..13935553Protein kinase domain containing protein
LOC_Os12g24430NANA12+13936133..13939099retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31864.1.S1_at--1050--4451Chr12:13912470..13912494 (25 bp)
GCCTGCCCAGAACATCGTGCGGCTG
LOC_Os12g24390
OsAffx.31864.1.S1_at--1054--2091Chr12:13912481..13912505 (25 bp)
ACATCGTGCGGCTGCGCAAACCGGA
LOC_Os12g24390
OsAffx.31864.1.S1_at--229--9131Chr12:13912487..13912511 (25 bp)
TGCGGCTGCGCAAACCGGAGCCGAC
LOC_Os12g24390
OsAffx.31864.1.S1_at--263--951Chr12:13912538..13912562 (25 bp)
AGGAGCGGTCCGTGCAGGCCGAGGT
LOC_Os12g24390
OsAffx.31864.1.S1_at--331--9151Chr12:13912565..13912589 (25 bp)
TGCGCCGGAGGCACGCCGACCTGAT
LOC_Os12g24390
OsAffx.31864.1.S1_at--452--4091Chr12:13912629..13912653 (25 bp)
CGACGCGCGGGAAACGATCATGGAC
LOC_Os12g24390
OsAffx.31864.1.S1_at--356--8151Chr12:13912638..13912662 (25 bp)
GGAAACGATCATGGACGCCCAGAAC
LOC_Os12g24390
OsAffx.31864.1.S1_at--521--411Chr12:13912645..13912669 (25 bp)
ATCATGGACGCCCAGAACGCGCTGG
LOC_Os12g24390
OsAffx.31864.1.S1_at--104--4111Chr12:13912692..13912716 (25 bp)
CGACAGGATGGTGAACGCGCTCCAA
LOC_Os12g24390
OsAffx.31864.1.S1_at--610--811Chr12:13912699..13912723 (25 bp)
ATGGTGAACGCGCTCCAAGCCGAGC
LOC_Os12g24390
OsAffx.31864.1.S1_at--591--8511Chr12:13912736..13912760 (25 bp)
TGGAATACATGGAGACGCAGGCGCT
LOC_Os12g24390
Target Sequence 
GCCTGCCCAGAACATCGTGCGGCTGCGCAAACCGGAGCCGACCACTCCCGGCAGCGACGACGGCATCGAGGAGCGGTCCG
TGCAGGCCGAGGTGGTGCGCCGGAGGCACGCCGACCTGATCGGCAAGGCCAGCGAGCTGGCGAATGGCCAGAAGCTGGGC
GACGCGCGGGAAACGATCATGGACGCCCAGAACGCGCTGGGGGACATCCTCCTGGACGACGGCGACAGGATGGTGAACGC
GCTCCAAGCCGAGCTGCTGCGGCTGCTGGAATACATGGAGACGCAGGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis