Browse Element(s) Details


OsAffx.30941.9.S1_x_at

Description tigr:9635.m01283
TID=OsAffx.30941.9
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1302011/11SWIM zinc finger family protein
LOC_Os09g255109/11transposon protein, putative, unclassified
LOC_Os09g084609/11transposon protein, putative, unclassified
LOC_Os06g369708/11transposon protein, putative, unclassified
LOC_Os11g124908/11transposon protein, putative, unclassified
LOC_Os05g102807/11transposon protein, putative, unclassified, expressed
LOC_Os12g244004/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12980OsAffx.22699.1.S1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.8279.1.S1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12990OsAffx.29755.1.S1_s_at11/117+7450746..7451786hypothetical protein
LOC_Os07g13000Os.10731.1.A1_a_at11/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.1.S1_at10/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000Os.48015.1.A1_at9/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000Os.48015.1.A1_x_at6/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.5.S1_x_at4/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.3.S1_x_at2/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.3.S1_s_at1/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13010OsAffx.29755.3.S1_x_at6/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.4.S1_x_at5/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.5.S1_x_at5/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010Os.44324.1.A1_at4/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.2.S1_x_at4/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13020OsAffx.30941.9.S1_x_at11/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.1.S1_x_at8/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.5.S1_x_at7/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.2.S1_x_at5/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13030OsAffx.28427.2.S1_x_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.2.S1_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.1.S1_x_at4/117+7472608..7474077hypothetical protein
LOC_Os07g13040OsAffx.5308.1.S1_at10/117+7474489..7478034hypothetical protein
LOC_Os07g13050OsAffx.28426.1.S1_at7/117+7481244..7482256hypothetical protein
LOC_Os07g13060NANA7+7485464..7488790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13070Os.23706.1.A1_x_at1/117+7491114..7493721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13080Os.14491.2.S1_x_at4/117+7494313..7497107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13080Os.47463.1.S1_x_at4/117+7494313..7497107transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30941.9.S1_x_at--13--7878Chr12:13917483..13917507 (25 bp)
GGTATTTTGTGTGTTCATGTGCTCA
LOC_Os12g24400
OsAffx.30941.9.S1_x_at--357--8696Chr12:13917500..13917524 (25 bp)
TGTGCTCAAAGTACTCATTCACTTG
LOC_Os12g24400
OsAffx.30941.9.S1_x_at--873--51Chr07:7468450..7468474 (25 bp)
ATTGATGTCTGCTGCTGTTCTTGAA
LOC_Os07g13020
OsAffx.30941.9.S1_x_at--841--5536Chr11:6980801..6980825 (25 bp)
GAAAGCAACCCTTTACTCAGGTTCA
LOC_Os11g12490
OsAffx.30941.9.S1_x_at--155--3757Chr12:13917645..13917669 (25 bp)
CTCAGGTTCAACATCTTGTCACAGA
LOC_Os12g24400
OsAffx.30941.9.S1_x_at--1114--933Chr09:15301891..15301915 (25 bp)
AGGCAATGAGTGACACGGCTCCTAA
LOC_Os09g25510
OsAffx.30941.9.S1_x_at--516--3875Chr12:13917793..13917817 (25 bp)
CTGTTCATGTTCAGGATGCGGCGGC
LOC_Os12g24400
OsAffx.30941.9.S1_x_at--854--8616Chr12:13920653..13920677 (25 bp)
TGGTGTAGCTTCTGTTGGTGCTCAA
NONE
OsAffx.30941.9.S1_x_at--905--7257Chr12:13920694..13920718 (25 bp)
GTCCTAGTGGTGTTGGTATTGATGC
NONE
OsAffx.30941.9.S1_x_at--191--3295Chr12:13920727..13920751 (25 bp)
CAAAGGGTGCGGTTGCTGAAACTGA
NONE
OsAffx.30941.9.S1_x_at--1088--7917Chr12:13920764..13920788 (25 bp)
GGTTGGAATTGCTTCTACTTCTGTT
NONE
Target Sequence 
GGTATTTTGTGTGTTCATGTGCTCAAAGTACTCATTCACTTGAACATAACAAAACTACCTGAGAAATATTTTATTGAAAG
ATGGAGGCTGAAAGACAAAAACCAGGAATTATTTGTGCCAAACACATTGATGTCTGCTGCTGTTCTTGAAAGCAACCCTT
TACTCAGGTTCAACATCTTGTCACAGAAAATGATTAAGTTGGCTTCAGATACATCAAAAACAAAAGAAAAGTTTGTATAT
GTGATGAATGAAAGTGACAAGATTAAAGATGGGTTGAAGGCAATGAGTGACACGGCTCCTAATGAGGCTACTGTTCATGT
TCAGGATGCGGCGGCGGCAACTTGTGGTGTAGCTTCTGTTGGTGCTCAAACTGGTATACTGATGGGTCCTAGTGGTGTTG
GTATTGATGCTGAGAGCACAAAGGGTGCGGTTGCTGAAACTGAACCAACAGATATGGTTGGAATTGCTTCTACTTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30941.9.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis