Browse Element(s) Details


OsAffx.28427.1.S1_x_at

Description gb:NM_186704.1
DB_XREF= gi:34900493
TID=OsAffx.28427.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OSJNBa0061L20.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1309011/11hypothetical protein
LOC_Os07g130304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13030OsAffx.28427.2.S1_x_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.2.S1_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.1.S1_x_at4/117+7472608..7474077hypothetical protein
LOC_Os07g13040OsAffx.5308.1.S1_at10/117+7474489..7478034hypothetical protein
LOC_Os07g13050OsAffx.28426.1.S1_at7/117+7481244..7482256hypothetical protein
LOC_Os07g13060NANA7+7485464..7488790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13070Os.23706.1.A1_x_at1/117+7491114..7493721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13080Os.14491.2.S1_x_at4/117+7494313..7497107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13080Os.47463.1.S1_x_at4/117+7494313..7497107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g13090OsAffx.28427.1.S1_at11/117+7497617..7498855hypothetical protein
LOC_Os07g13090OsAffx.28427.1.S1_x_at11/117+7497617..7498855hypothetical protein
LOC_Os07g13090OsAffx.28427.2.S1_x_at4/117+7497617..7498855hypothetical protein
LOC_Os07g13100Os.44316.2.S1_x_at11/117+7500194..7502193DNA-binding protein, putative
LOC_Os07g13120OsAffx.7789.1.S1_x_at1/117+7506703..7513152retrotransposon protein, putative, unclassified
LOC_Os07g13120OsAffx.8279.1.S1_at1/117+7506703..7513152retrotransposon protein, putative, unclassified
LOC_Os07g13120OsAffx.22699.1.S1_x_at1/117+7506703..7513152retrotransposon protein, putative, unclassified
LOC_Os07g13120OsAffx.16451.1.A1_x_at1/117+7506703..7513152retrotransposon protein, putative, unclassified
LOC_Os07g13130Os.27066.1.A1_x_at3/117+7514025..7517183hypothetical protein
LOC_Os07g13140OsAffx.1455.1.S1_at11/117+7522318..7530761retrotransposon protein, putative, unclassified
LOC_Os07g13140OsAffx.4851.1.S1_x_at1/117+7522318..7530761retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28427.1.S1_x_at--1105--2111Chr07:7498191..7498215 (25 bp)
ACAGGCTGTACGTGTTCGATGCGAC
LOC_Os07g13090
OsAffx.28427.1.S1_x_at--579--8751Chr07:7498185..7498209 (25 bp)
TGTACGTGTTCGATGCGACCACGGT
LOC_Os07g13090
OsAffx.28427.1.S1_x_at--885--3331Chr07:7498166..7498190 (25 bp)
CACGGTGGACGACTACCATGACGGA
LOC_Os07g13090
OsAffx.28427.1.S1_x_at--482--1731Chr07:7498152..7498176 (25 bp)
ACCATGACGGAGTCGTTGGAGGCAT
LOC_Os07g13090
OsAffx.28427.1.S1_x_at--937--10851Chr07:7498137..7498161 (25 bp)
TTGGAGGCATGCACTGCTTTAGACT
LOC_Os07g13090
OsAffx.28427.1.S1_x_at--879--9071Chr07:7498123..7498147 (25 bp)
TGCTTTAGACTGACCGACGACGACG
LOC_Os07g13090
OsAffx.28427.1.S1_x_at--687--391Chr07:7498000..7498024 (25 bp)
ATCACCGGCAAAATCGAGGCGTACG
LOC_Os07g13090
OsAffx.28427.1.S1_x_at--32--5252Chr07:7473554..7473577 (24 bp)
GAAGGACGGACCTTCTTCGTGTCCG
LOC_Os07g13030
OsAffx.28427.1.S1_x_at--81--1872Chr07:7473590..7473614 (25 bp)
ACGACGAGGGTACCTTCTCCTACAG
LOC_Os07g13030
OsAffx.28427.1.S1_x_at--855--10572Chr07:7473604..7473627 (24 bp)
TTCTCCTACAGCGTCGAGAGCGGCG
LOC_Os07g13030
OsAffx.28427.1.S1_x_at--905--7692Chr07:7473701..7473725 (25 bp)
GGGTCGGCCTCCATCATAGCGACGA
LOC_Os07g13030
Target Sequence 
ACAGGCTGTACGTGTTCGATGCGACCACGGTGGACGACTACCATGACGGAGTCGTTGGAGGCATGCACTGCTTTAGACTG
ACCGACGACGACGGTTCGAGGAAGAAGAAAGAGCGGTGGTCATGGCGGCACCCGGACGCCTCCACGCCCATCTCGTGGAG
CTACGACCCGTCCCGTCTCCCGTTCGACGCCATCACCGGCAAAATCGAGGCGTACGCCGTCCACCCGGAAGGACGGACCT
TCTTCGTGTCCGTGCGGAAGCTGTTCCGCCGCGTGCCCGGCGCCGTGGACGACGAGGGTACCTTCTCCTACAGCGTCGAG
AGCGGCGCGTGGACGCGCCGCGGGGGATGGATGCTGCCGTTCGTCGGCCACGGCCACTACGACGGCGAGCTCGGCTCGTG
GGTCGGCCTCCATCATAGCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28427.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis