Browse Element(s) Details


OsAffx.30941.5.S1_x_at

Description tigr:9633.m00892
TID=OsAffx.30941.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1028011/11transposon protein, putative, unclassified, expressed
LOC_Os09g084609/11transposon protein, putative, unclassified
LOC_Os09g255108/11transposon protein, putative, unclassified
LOC_Os12g244008/11transposon protein, putative, unclassified
LOC_Os06g369707/11transposon protein, putative, unclassified
LOC_Os07g130207/11SWIM zinc finger family protein
LOC_Os11g124907/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10270OsAffx.29755.1.S1_s_at9/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.4.S1_x_at5/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.3.S1_x_at5/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.2.S1_x_at4/115+5581558..5588945hypothetical protein
LOC_Os05g10270OsAffx.29755.5.S1_x_at2/115+5581558..5588945hypothetical protein
LOC_Os05g10280OsAffx.30941.5.S1_x_at11/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.9.S1_x_at7/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.1.S1_x_at5/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10280OsAffx.30941.2.S1_x_at5/115+5589441..5595772transposon protein, putative, unclassified, expressed
LOC_Os05g10290OsAffx.26809.1.S1_at11/115+5600025..5600425hypothetical protein
LOC_Os05g10300NANA5+5602517..5603188hypothetical protein
LOC_Os05g10310Os.24864.1.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.3.S1_at11/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10310Os.24864.2.S1_at9/115+5605024..5612217Acid phosphatase, putative, expressed
LOC_Os05g10320OsAffx.26810.1.S1_at11/115+5615175..5615447hypothetical protein
LOC_Os05g10330OsAffx.26811.1.S1_at10/115+5617833..5620429HAD superfamily phosphatase containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30941.5.S1_x_at--1136--6235Chr12:13917028..13917052 (25 bp)
GATGGGCACCAGTTTACTTCAAAAG
LOC_Os12g24400
OsAffx.30941.5.S1_x_at--38--3197Chr12:13917053..13917077 (25 bp)
CAATTGGTGCCCTTTGATTCAGACA
LOC_Os12g24400
OsAffx.30941.5.S1_x_at--272--6756Chr12:13917124..13917148 (25 bp)
GTTCATCTCATAGTGTTTCTGCATT
LOC_Os12g24400
OsAffx.30941.5.S1_x_at--775--6836Chr12:13917138..13917162 (25 bp)
GTTTCTGCATTCCTAGCACAGTATG
LOC_Os12g24400
OsAffx.30941.5.S1_x_at--553--8217Chr12:13917203..13917227 (25 bp)
GGAATCGCTGACTAGGAATACTGTT
LOC_Os12g24400
OsAffx.30941.5.S1_x_at--125--2077Chr12:13917649..13917669 (21 bp)
ACTTGGTTCAACATCTTGTCACAGA
LOC_Os12g24400
OsAffx.30941.5.S1_x_at--158--6553Chr12:13917674..13917698 (25 bp)
GATTAAGTTGGCTTCAGATGCATCA
LOC_Os12g24400
OsAffx.30941.5.S1_x_at--1113--933Chr09:15301891..15301915 (25 bp)
AGGCAATGAGTGACACGGCTCCTAA
LOC_Os09g25510
OsAffx.30941.5.S1_x_at--213--9936Chr12:13917791..13917815 (25 bp)
TACTGTTCATGTTCAGGATGCGGCG
LOC_Os12g24400
OsAffx.30941.5.S1_x_at--711--8611Chr05:5590416..5590440 (25 bp)
TGGTGTAGTTTCTGTTGGTGCTCAA
LOC_Os05g10280
OsAffx.30941.5.S1_x_at--1087--7917Chr12:13920764..13920788 (25 bp)
GGTTGGAATTGCTTCTACTTCTGTT
NONE
Target Sequence 
GATGGGCACCAGTTTACTTCAAAAGCAATTGGTGCCCTTTGATTCAGACAACAGCAAGGAGTGAGGGGACAAATTCAAGG
CACAAAGCTGACATTTGTTCATCTCATAGTGTTTCTGCATTCCTAGCACAGTATGAAAGGATTGCAGAAACAATTTATGA
GTGCTTCAAAGAACAGGAATCGCTGACTAGGAATACTGTTCCAGATACTTGGTTCAACATCTTGTCACAGAAAATGATTA
AGTTGGCTTCAGATGCATCAAAAACAAAAGAAAAGTTTGTATATGTGATGAATGAAAGTGACAAGATTGAAGATGGGTTA
AAGGCAATGAGTGACACGGCTCCTAATGAGGTTACTGTTCATGTTCAGGATGCGGCGACGACAACTTGTGGTGTAGTTTC
TGTTGGTGCTCAAACTGGTATACTGATGGGTCCTAGTGGTGTTGGTATTGATGCTGAGAGCACAAAGGGTGCGGTTGATG
AAACTGAAACAATAGATATGGTTGGAATTGCTTCTACTTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30941.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis