Browse Element(s) Details


OsAffx.29755.3.S1_x_at

Description tigr:9637.m02206
TID=OsAffx.29755.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2552010/11hypothetical protein
LOC_Os09g084507/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os07g130106/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g102705/11hypothetical protein
LOC_Os06g369604/11hypothetical protein
LOC_Os11g125004/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os12g244102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25490Os.10206.1.S1_at11/119+15280319..15284892Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os09g25500Os.17086.1.S1_at11/119+15285308..15291579expressed protein
LOC_Os09g25510OsAffx.30941.1.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.9.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.5.S1_x_at8/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.2.S1_x_at5/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25520OsAffx.29755.1.S1_s_at11/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_x_at10/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_at8/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.4.S1_x_at5/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.5.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.2.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25530OsAffx.17891.1.S1_at11/119+15314583..15314906hypothetical protein
LOC_Os09g25540OsAffx.17892.1.S1_at11/119+15319528..15322850Leucine Rich Repeat family protein
LOC_Os09g25550Os.16309.1.S1_at11/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25550Os.23249.1.A1_at1/119+15327753..15331300puative protein, putative, expressed
LOC_Os09g25560Os.53342.1.S1_at11/119+15331959..15337794integral membrane transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29755.3.S1_x_at--21--5054Chr09:4408476..4408500 (25 bp)
GCAGAGTTCACAATCATCACCTGAT
LOC_Os09g08450
OsAffx.29755.3.S1_x_at--267--532Chr09:4408591..4408611 (21 bp)
ATCGACTCACTAAATGCTTCTGCCA
LOC_Os09g08450
OsAffx.29755.3.S1_x_at--1041--3416Chr07:7465259..7465283 (25 bp)
CAGACACAATCTTTATCGCCCTAAA
LOC_Os07g13010
OsAffx.29755.3.S1_x_at--1104--5191NONE
GAATTGTCCATCCAATTCTAATGGA
NONE
OsAffx.29755.3.S1_x_at--150--2856Chr09:4409318..4409342 (25 bp)
AAGTCACATGGTCATCATTGTCTAA
LOC_Os09g08450
OsAffx.29755.3.S1_x_at--39--8631Chr09:15304192..15304216 (25 bp)
TGGTGGATACATATGTCCTCAATGC
LOC_Os09g25520
OsAffx.29755.3.S1_x_at--1038--5337Chr09:4409397..4409421 (25 bp)
GAAGATTGCCAACGACCAGAATAAC
LOC_Os09g08450
OsAffx.29755.3.S1_x_at--907--3412Chr09:4409457..4409745 (25 bp)
CAGAACTAGTCTTATTTTCCCATGC
LOC_Os09g08450
OsAffx.29755.3.S1_x_at--119--10314Chr09:4409736..4409760 (25 bp)
TTTCCCATGCCTGTATGACAATCAT
LOC_Os09g08450
OsAffx.29755.3.S1_x_at--435--10794Chr09:4409798..4409822 (25 bp)
TTGTCTTCCTGGACTCCATTTATGA
LOC_Os09g08450
OsAffx.29755.3.S1_x_at--848--2872Chr07:7466518..7466649 (25 bp)
AAGGGCTACTGATACCAGGATTCAT
LOC_Os07g13010
Target Sequence 
GCAGAGTTCACAATCATCACCTGATATAGGTATGAATTCTCCAAGAATAGCACAAATGAGGGAACCAAATCAACATGCTC
AAGCAGAAGAAAGACAATATTCAATGATAAGAATCATCGACTCACTAAATGCTTCTGCCAACTGCTCTGGTACCAGACAC
AATCTTTATCGCCCTAAAAGAATTGTCCATCCAATTCTAATGGACAATGTAAAAGTCACATGGTCATCATTGTCTAAATC
TCTATCACCAAGGGGAGTGGTGGATACATATGTCCTCAATGCATATGCCAAGAAGATTGCCAACGACCAGAATAACAAAG
AAAATGAATACAGGAATTTTTACTTCTTCCACAGAACTAGTCTTATTTTCCCATGCCTGTATGACAATCATTGGTTTGTG
TTTACTGTGGACATCAAGGGGCATCACTTTGTCTTCCTGGACTCCATTTATGATGAAAACAACAAATATCATAAGAAAAT
TCAAGGGCTACTGATACCAGGATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29755.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis