Browse Element(s) Details


Os.17086.1.S1_at

Description gb:AK100679.1
DB_XREF= gi:32985888
TID=Os.17086.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113H15, full insert sequence.
FL= gb:AK100679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2550011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25470OsAffx.30017.1.S1_at11/119+15267402..15268049hypothetical protein
LOC_Os09g25480OsAffx.10645.1.S1_at3/119+15268383..15269689hypothetical protein
LOC_Os09g25480OsAffx.10645.2.S1_x_at2/119+15268383..15269689hypothetical protein
LOC_Os09g25490Os.10206.1.S1_at11/119+15280319..15284892Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os09g25500Os.17086.1.S1_at11/119+15285308..15291579expressed protein
LOC_Os09g25510OsAffx.30941.1.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.9.S1_x_at9/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.5.S1_x_at8/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25510OsAffx.30941.2.S1_x_at5/119+15299004..15302471transposon protein, putative, unclassified
LOC_Os09g25520OsAffx.29755.1.S1_s_at11/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_x_at10/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.3.S1_at8/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.4.S1_x_at5/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.5.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25520OsAffx.29755.2.S1_x_at4/119+15303466..15310899hypothetical protein
LOC_Os09g25530OsAffx.17891.1.S1_at11/119+15314583..15314906hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17086.1.S1_at--292--4871Chr09:15285945..15285969 (25 bp)
GCTATGGCAGCAAAACTACAGGTAC
LOC_Os09g25500
Os.17086.1.S1_at--703--4971Chr09:15285742..15285766 (25 bp)
GCATCTCACACAACTGAGGCCTGGA
LOC_Os09g25500
Os.17086.1.S1_at--554--891Chr09:15285726..15285750 (25 bp)
AGGCCTGGAATTGCTCATATGATTT
LOC_Os09g25500
Os.17086.1.S1_at--1127--1371Chr09:15285672..15285696 (25 bp)
AGACCAGCCTTCTGAACAGGTACAC
LOC_Os09g25500
Os.17086.1.S1_at--325--5871Chr09:15285636..15285660 (25 bp)
GAGCCTCTGGCGATATGAACATATT
LOC_Os09g25500
Os.17086.1.S1_at--10--2471Chr09:15285567..15285591 (25 bp)
AAGAACGTTGAACATCCCCTGGTGA
LOC_Os09g25500
Os.17086.1.S1_at--512--5491Chr09:15285558..15285582 (25 bp)
GAACATCCCCTGGTGATCATGGAGT
LOC_Os09g25500
Os.17086.1.S1_at--769--411Chr09:15285543..15285567 (25 bp)
ATCATGGAGTGATGCTGTGCAGCTA
LOC_Os09g25500
Os.17086.1.S1_at--784--2431Chr09:15285482..15285506 (25 bp)
AAAAGGTCTCCTCATGTGTAAATAA
LOC_Os09g25500
Os.17086.1.S1_at--604--3071Chr09:15285462..15285486 (25 bp)
AATAAATTCATTCAGGTTCCCCACA
LOC_Os09g25500
Os.17086.1.S1_at--931--5911Chr09:15285380..15285404 (25 bp)
GAGCTATGTTCTTTCCGATTGTATT
LOC_Os09g25500
Target Sequence 
GCTATGGCAGCAAAACTACAGGTACAGGAGTCCAGCCTGCGGACGCATCTCACACAACTGAGGCCTGGAATTGCTCATAT
GATTTGACAATCTAAGGGAAGATCTGCAAGTCCCAGACCAGCCTTCTGAACAGGTACACCAGTGCAAGTTGAGCCTCTGG
CGATATGAACATATTGTGCAAACATACAAGGAGTTTGTAGAGATGAAATAATAGACCAAAAGAACGTTGAACATCCCCTG
GTGATCATGGAGTGATGCTGTGCAGCTAACANCTCATGGTGCGGTACAGATGATAGATTTACTNAAAAGGTCTCCTCATG
TGTAAATAAATTCATTCAGGTTCCCCACACCCACCTACCTCTCTTTAGTTTCTCTAAAATTATTTGTTAGTATTTCTACA
ATGATAGAGCTATGTTCTTTCCGATTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis