Browse Element(s) Details


OsAffx.30017.1.S1_at

Description tigr:9637.m02201
TID=OsAffx.30017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2547011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25440OsAffx.17889.1.S1_at10/119+15244152..15246476Zinc finger, C2H2 type family protein, expressed
LOC_Os09g25450OsAffx.30016.1.S1_at11/119+15248651..15249123hypothetical protein
LOC_Os09g25460Os.37941.1.S1_at11/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25460OsAffx.23984.1.S1_x_at1/119+15250888..15255324Transferase family protein, expressed
LOC_Os09g25470OsAffx.30017.1.S1_at11/119+15267402..15268049hypothetical protein
LOC_Os09g25480OsAffx.10645.1.S1_at3/119+15268383..15269689hypothetical protein
LOC_Os09g25480OsAffx.10645.2.S1_x_at2/119+15268383..15269689hypothetical protein
LOC_Os09g25490Os.10206.1.S1_at11/119+15280319..15284892Cellulose synthase A catalytic subunit 8, putative, expressed
LOC_Os09g25500Os.17086.1.S1_at11/119+15285308..15291579expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30017.1.S1_at--131--4431Chr09:15267432..15267456 (25 bp)
GCCATGGTGACAGACGCCACGTGCG
LOC_Os09g25470
OsAffx.30017.1.S1_at--286--7371Chr09:15267438..15267462 (25 bp)
GTGACAGACGCCACGTGCGCGAACA
LOC_Os09g25470
OsAffx.30017.1.S1_at--522--8951Chr09:15267439..15267463 (25 bp)
TGACAGACGCCACGTGCGCGAACAC
LOC_Os09g25470
OsAffx.30017.1.S1_at--889--1931Chr09:15267481..15267505 (25 bp)
ACGGCAAAGAGCTTCCTGGGGCAGC
LOC_Os09g25470
OsAffx.30017.1.S1_at--12--2171Chr09:15267529..15267553 (25 bp)
ACAGCGACGTCTCCGTTAGACATGG
LOC_Os09g25470
OsAffx.30017.1.S1_at--1030--4591Chr09:15267532..15267556 (25 bp)
GCGACGTCTCCGTTAGACATGGCAA
LOC_Os09g25470
OsAffx.30017.1.S1_at--18--5771Chr09:15267534..15267558 (25 bp)
GACGTCTCCGTTAGACATGGCAACG
LOC_Os09g25470
OsAffx.30017.1.S1_at--28--7171Chr09:15267537..15267561 (25 bp)
GTCTCCGTTAGACATGGCAACGGGA
LOC_Os09g25470
OsAffx.30017.1.S1_at--930--10431Chr09:15267544..15267568 (25 bp)
TTAGACATGGCAACGGGAAATTCCC
LOC_Os09g25470
OsAffx.30017.1.S1_at--1086--3471Chr09:15267549..15267573 (25 bp)
CATGGCAACGGGAAATTCCCCGTCG
LOC_Os09g25470
OsAffx.30017.1.S1_at--292--7173Chr09:15267570..15267594 (25 bp)
GTCGGAGATTACACCACCAGACCCG
LOC_Os09g25470
Target Sequence 
GCCATGGTGACAGACGCCACGTGCGCGAACACCCTCGCGGCGGCGCAACACGGCAAAGAGCTTCCTGGGGCAGCGAGGTC
GACGATGGCGGCCGCCCACAGCGACGTCTCCGTTAGACATGGCAACGGGAAATTCCCCGTCGGAGATTACACCACCAGAC
CCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis